View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_low_54 (Length: 306)
Name: NF8503_low_54
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 32786962 - 32787252
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| || |||||||||||||| ||||||| ||||||||||| |
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| T |
32786962 |
tatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatatgtgggatcacaatctcagctacgacatcagggtttttgatgtctttgt |
32787061 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcaggctcaacagttctcaatgcagccacgaataataccgtat-catattgtattcataaatgcataagtgtaaagtaatt |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |||||| ||||| ||| || || ||||||||||||||||| |||||||||||| |
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|
| T |
32787062 |
gaccacagttgaggctggatcaggctcaacagttcttaatgcagtcacgaaatataccttataaatcttatattcataaatgcataaatgtaaagtaatt |
32787161 |
T |
|
| Q |
200 |
taccaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgctatcgtcaggccttggaat |
290 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||| |
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| T |
32787162 |
taccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaggtgcagtgtgtgcataatgttatcgtcaggccttggaat |
32787252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 32310313 - 32310023
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||| |||||||||| |
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|
| T |
32310313 |
tatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatcacaatctcagctacgacatcaaggtttttcatgtctttgt |
32310214 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcaggctcaacagttctcaatgcagccacgaataataccgtatcatattgtattcataaatgcataagtgtaaagtaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||| |
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|
| T |
32310213 |
gaccacagttgaggctgcatcaggctcaacagttcgcaatgcagccacgaaatataccttatcatatcatattcttaaatgcataaatgtaaagtaattt |
32310114 |
T |
|
| Q |
201 |
accaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgctatcgtcaggccttggaatt |
291 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||| | |||||||||||||||||||| |
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|
| T |
32310113 |
accaaggaggctgactgtttcacgtgcgttgaatcctctaaggttgaagaggtgcagtgtgcgcataaggttatcgtcaggccttggaatt |
32310023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 32564507 - 32564797
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||| |||||||||| |
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|
| T |
32564507 |
tatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatcacaatctcagctacgacatcaaggtttttcatgtctttgt |
32564606 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcaggctcaacagttctcaatgcagccacgaataataccgtatcatattgtattcataaatgcataagtgtaaagtaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||| |
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|
| T |
32564607 |
gaccacagttgaggctgcatcaggctcaacagttcgcaatgcagccacgaaatataccttatcatatcatattcttaaatgcataaatgtaaagtaattt |
32564706 |
T |
|
| Q |
201 |
accaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgctatcgtcaggccttggaatt |
291 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||| | |||||||||||||||||||| |
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|
| T |
32564707 |
accaaggaggctgactgtttcacgtgcgttgaatcctctaaggttgaagaggtgcagtgtgcgcataaggttatcgtcaggccttggaatt |
32564797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 32814170 - 32814464
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtca-----gctacgacatcggggttttggatgtc |
95 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||| || ||| | ||||||||| ||||||| |||||| |
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|
| T |
32814170 |
tatcaagaaaccaacagatctcattagccttatacaaggttttaaaaaatgtgtgagatcacaatctcaattacgatacgacatcagggtttttgatgtc |
32814269 |
T |
|
| Q |
96 |
tttgtgaccacagttgaggctgcatcaggctcaacagttctcaatgcagccacgaataataccgtatcatattgtattcataaatgcataagtgtaaagt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||| |
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|
| T |
32814270 |
tttgtgaccacagttgaggctgcatcaggctcaacagtttgcattgcagccacaaataataccttatcatattatattcatgaatgcataagtgtaaagt |
32814369 |
T |
|
| Q |
196 |
aatttaccaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgctatcgtcaggccttggaat |
290 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32814370 |
aatttaccaaggaggctgactgtttcccgtgcgttgaatcctctaagattgaagaattgaagtgtgcgcataatgctatcgtcaggccttggaat |
32814464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 32306180 - 32305891
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||| | || |||||||| ||| ||||| || |||||||||| || |||||||||||||| ||||||| |||||||||| |
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|
| T |
32306180 |
tatccagaaaccaacagatctcattaaccctattcaaggtttgaaaaattacgtgagatcacaatctcagctacgacatcagggtttttgatgtctttgc |
32306081 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcaggctcaacagttctcaatgcagccacgaataataccgtatcatattgtattcataaatgcataagtgtaaagtaattt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32306080 |
gaccacaattgaggctgcatcaggctcaacagttcgcaatgcagccacaaataatacattatcatattatattcataaatgcataagtgtaaagtaattt |
32305981 |
T |
|
| Q |
201 |
accaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgctatcgtcaggccttggaat |
290 |
Q |
| |
|
| ||||||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
32305980 |
atcaaggaggctgactgtttcatgcgcgttgaatcctctaagattgaagaggtgcagtgcgcgcgtaatgttatcgtcaggccttggaat |
32305891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 28221581 - 28221452
Alignment:
| Q |
162 |
tcatattgtattcataaatgcataagtgtaaagtaatttaccaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtg |
261 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||| |
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|
| T |
28221581 |
tcatattataatcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgcattgaatcctctaagattgaagaggtgcagtgtg |
28221482 |
T |
|
| Q |
262 |
cgcgtaatgctatcgtcaggccttggaatt |
291 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |
|
|
| T |
28221481 |
cgcgtgatgttatcgtcaggccttggaatt |
28221452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 28214714 - 28214832
Alignment:
| Q |
173 |
tcataaatgcataagtgtaaagtaatttaccaaggaggccgactgtttcccgttcgttgaatcctctaagattgaaaaggtgcagtgtgcgcgtaatgct |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| | |
|
|
| T |
28214714 |
tcataaatgcataagtgtaaagtaatttacctaggaggctgactgtttcccgtgctttgaatcctctaagattgaagaggtgcagtgtgcgcgtgatgtt |
28214813 |
T |
|
| Q |
273 |
atcgtcaggccttggaatt |
291 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28214814 |
atcgtcaggccttggaatt |
28214832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 28214523 - 28214644
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| ||||| |||| ||||| || || |||||| ||||||| |||||| || |||||||| |
|
|
| T |
28214523 |
tatcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga--tcgtaatttcagctgcgacatcatggtttttgaagtctttgt |
28214620 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcagg |
124 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
28214621 |
gaccacagttgaggtcgcatcagg |
28214644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28221761 - 28221640
Alignment:
| Q |
1 |
tatcaagaaaccaacagatctcatgagccttattcaagattttaaaaaatatgtgagatcaccatgtcagctacgacatcggggttttggatgtctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| ||||| ||| | ||| |||| | || |||||| ||||||| |||||| || |||| ||| |
|
|
| T |
28221761 |
tatcaagaaaccaacagatctcattagtcatattcaaggttttataaa--aagtgtgatcgcaatttcagctgcgacatcatggtttttgaagtctctgt |
28221664 |
T |
|
| Q |
101 |
gaccacagttgaggctgcatcagg |
124 |
Q |
| |
|
| |||||||||||| |||||||| |
|
|
| T |
28221663 |
ggccacagttgaggtcgcatcagg |
28221640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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