View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_60 (Length: 279)
Name: NF8503_low_60
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 48514937 - 48515127
Alignment:
| Q |
1 |
ccatttagaccaactcatnnnnnnntcacaccaagaactagttttataaatgagaaagagtaatagagaaatggatgaagaaacggatagagagacaaca |
100 |
Q |
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| T |
48514937 |
ccatttagaccaactcataaaaaaatcacaccaagaactagttttataaatgagaaagagtaatagagaaatggatgaagaaacggatagagagacaaca |
48515036 |
T |
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| Q |
101 |
caacattgaggactttctttatttgtttccctatatacaattccaaatattaattttctaacaaaaatatttatgttaggcttaatttaaa |
191 |
Q |
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| T |
48515037 |
caacattgaggactttctttgtatgtttccctatatacaattccaaatattaattttctaacaaaaatatttatgttaggcttaatttaaa |
48515127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 48515147 - 48515231
Alignment:
| Q |
178 |
aggcttaatttaaatgccttgtatagaccacaatataactatataattttgatgagctagcaacactctttctatctatctttct |
262 |
Q |
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| T |
48515147 |
aggcttaatttaaatgccttgtatagaccacaatataactatataattttgatgagctagcaacactctttctatctatctttct |
48515231 |
T |
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