View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8503_low_61 (Length: 276)

Name: NF8503_low_61
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8503_low_61
NF8503_low_61
[»] chr7 (9 HSPs)
chr7 (13-257)||(23417133-23417377)
chr7 (91-257)||(36657597-36657769)
chr7 (40-212)||(19625430-19625602)
chr7 (40-257)||(12633387-12633612)
chr7 (55-237)||(261708-261889)
chr7 (90-242)||(29428892-29429044)
chr7 (40-159)||(35759799-35759918)
chr7 (90-216)||(5925125-5925251)
chr7 (121-189)||(23113872-23113940)
[»] chr1 (22 HSPs)
chr1 (13-257)||(42365849-42366093)
chr1 (13-233)||(50678069-50678272)
chr1 (61-257)||(42934184-42934383)
chr1 (76-241)||(41404052-41404217)
chr1 (53-257)||(15581529-15581738)
chr1 (75-257)||(34969747-34969924)
chr1 (75-257)||(7741068-7741256)
chr1 (147-241)||(16302758-16302852)
chr1 (75-188)||(48046435-48046548)
chr1 (137-257)||(49764865-49764985)
chr1 (75-181)||(39793621-39793727)
chr1 (83-215)||(19551166-19551297)
chr1 (91-215)||(42117145-42117269)
chr1 (91-215)||(49741325-49741449)
chr1 (90-218)||(50108993-50109123)
chr1 (88-215)||(50139554-50139681)
chr1 (40-109)||(16302624-16302693)
chr1 (143-215)||(23473769-23473841)
chr1 (86-189)||(31991631-31991733)
chr1 (90-167)||(30190811-30190888)
chr1 (42-106)||(7521239-7521303)
chr1 (177-237)||(12441134-12441194)
[»] scaffold0110 (1 HSPs)
scaffold0110 (26-256)||(38503-38728)
[»] chr3 (19 HSPs)
chr3 (39-257)||(27011144-27011368)
chr3 (61-241)||(42029249-42029430)
chr3 (75-241)||(39439839-39440005)
chr3 (40-215)||(25045382-25045557)
chr3 (55-178)||(32278405-32278528)
chr3 (61-215)||(25909352-25909507)
chr3 (40-241)||(29765165-29765363)
chr3 (57-152)||(40024811-40024906)
chr3 (81-216)||(24374193-24374318)
chr3 (91-244)||(14567825-14567978)
chr3 (55-257)||(44713191-44713394)
chr3 (55-211)||(23420240-23420399)
chr3 (147-215)||(40026083-40026151)
chr3 (142-211)||(23466708-23466778)
chr3 (40-189)||(42957239-42957387)
chr3 (94-184)||(2230101-2230191)
chr3 (165-237)||(20189695-20189773)
chr3 (156-241)||(2266864-2266949)
chr3 (90-187)||(49368372-49368469)
[»] chr2 (9 HSPs)
chr2 (13-257)||(44246309-44246543)
chr2 (61-241)||(28219002-28219183)
chr2 (40-215)||(28199158-28199333)
chr2 (75-257)||(10354218-10354405)
chr2 (55-255)||(1499181-1499382)
chr2 (137-241)||(7444718-7444822)
chr2 (76-257)||(17999928-18000107)
chr2 (90-187)||(20717593-20717690)
chr2 (168-241)||(6476805-6476878)
[»] scaffold0224 (1 HSPs)
scaffold0224 (61-257)||(12388-12587)
[»] chr5 (9 HSPs)
chr5 (61-238)||(4943514-4943692)
chr5 (40-257)||(30084868-30085085)
chr5 (75-241)||(11617218-11617384)
chr5 (75-257)||(9159405-9159586)
chr5 (75-241)||(5247872-5248031)
chr5 (110-241)||(7505998-7506129)
chr5 (91-215)||(32233013-32233137)
chr5 (75-189)||(29293199-29293312)
chr5 (90-187)||(13191724-13191821)
[»] scaffold0127 (1 HSPs)
scaffold0127 (76-241)||(30118-30283)
[»] chr4 (17 HSPs)
chr4 (61-241)||(21263547-21263728)
chr4 (65-257)||(46944014-46944206)
chr4 (75-241)||(50859151-50859317)
chr4 (75-238)||(22405023-22405187)
chr4 (75-257)||(35292008-35292195)
chr4 (55-215)||(35033776-35033936)
chr4 (76-241)||(41809872-41810042)
chr4 (79-240)||(31227683-31227843)
chr4 (75-257)||(41223640-41223828)
chr4 (143-257)||(3121191-3121310)
chr4 (75-257)||(48084640-48084832)
chr4 (141-215)||(4292685-4292759)
chr4 (91-215)||(26861354-26861478)
chr4 (177-215)||(4342109-4342147)
chr4 (61-159)||(55841423-55841522)
chr4 (110-212)||(25052678-25052780)
chr4 (91-159)||(55777243-55777311)
[»] scaffold0022 (2 HSPs)
scaffold0022 (76-241)||(44099-44264)
scaffold0022 (76-241)||(77820-77985)
[»] chr8 (13 HSPs)
chr8 (14-238)||(28873629-28873856)
chr8 (137-257)||(42025391-42025516)
chr8 (77-241)||(38679725-38679888)
chr8 (75-241)||(34924720-34924887)
chr8 (88-243)||(29844220-29844375)
chr8 (137-241)||(14112379-14112484)
chr8 (137-211)||(30800196-30800270)
chr8 (90-187)||(22531293-22531390)
chr8 (90-187)||(22535978-22536075)
chr8 (90-187)||(25993899-25993996)
chr8 (91-215)||(11354778-11354902)
chr8 (66-186)||(5358200-5358320)
chr8 (150-218)||(20989714-20989782)
[»] scaffold0227 (1 HSPs)
scaffold0227 (126-241)||(221-336)
[»] scaffold0039 (1 HSPs)
scaffold0039 (75-241)||(56900-57066)
[»] chr6 (4 HSPs)
chr6 (85-167)||(10871282-10871364)
chr6 (86-215)||(19694550-19694679)
chr6 (90-186)||(33091175-33091271)
chr6 (91-244)||(7365049-7365202)
[»] scaffold0011 (1 HSPs)
scaffold0011 (91-241)||(9216-9365)
[»] scaffold0097 (1 HSPs)
scaffold0097 (90-187)||(21430-21527)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 23417133 - 23417377
Alignment:
Q  13 gcacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaa 112  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23417133 gcacacacgcaagaaaaaagaagaaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacaccccaaa 23417232  T
Q  113 ttggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  23417233 ttggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcatactccatgccattccattccttttttacaaaaccaaacaatg 23417332  T
Q  213 gaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23417333 gaacatggttccatcccactccattccatcactctccatcaatcc 23417377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 36657597 - 36657769
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| ||||||| |||| ||||||  |||   ||||| ||||||||||||||||||||||||||||||| | || ||||||||||     
T  36657597 attccattggatacaccccaaattgggtggattgaaaatctggttaaatgaatggtattggatggaatgggttccatcacacttcttttcattccatttt 36657696  T
Q  191 tttt-ttacaaaaccaaacaatggaacatggttccatcccac-----tccattccatcactctccatcaatcc 257  Q
    |||| |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  36657697 tttttttacaaaaccaaacaatggaacatggttccatcccaccccattccattccatcactctccatcaatcc 36657769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 19625602 - 19625430
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||  | |||||||||| ||||||    ||||||||||||||||| ||||||||||||||  || ||||  |||||| ||||||||| ||||    
T  19625602 tgaaatagaaatagtagggataaaaatgtaattcggttattaatgtgttccatcccattggatacaccacaatttgggaggaatggaaaattggatgaat 19625503  T
Q  140 gagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatg 212  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||| | ||||| |||||||||||||||    
T  19625502 gagtggtattggatggaattagttccatcacattccattccattccattacatttttgcaaaaccaaacaatg 19625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 257
Target Start/End: Complemental strand, 12633612 - 12633387
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    ||||||||||||   ||||  |||||||||||   ||||||||||| || ||||||||||||||||||| || ||||  |||||| ||||||||   |||    
T  12633612 tgaaatagaaaaaatagggtcaaaattgtaattgtattattaatgtatttcattccattggatacaccctaatttgggaggaatggaaaattggctaaat 12633513  T
Q  140 gagtggtattgg---atggaatgggttccatcacactccattccattccatttcttt-----tttacaaaaccaaacaatggaacatggttccatcccac 231  Q
    ||||||||||||   |||||||| |||||||||||||||| ||||||||||| | ||     ||||||||||||||||||||||  |||  | |||||||    
T  12633512 gagtggtattggtcgatggaatgagttccatcacactccactccattccattccattatttgtttacaaaaccaaacaatggaatgtggccctatcccac 12633413  T
Q  232 tccattccatcactctccatcaatcc 257  Q
     |||||||||||||||||| ||||||    
T  12633412 accattccatcactctccaccaatcc 12633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 261708 - 261889
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatg 154  Q
    ||||| |||||||||||    |||||||||||||||||| |||||||||||||| ||||||   |||||| |||||||    ||||||| ||||| ||||    
T  261708 agggacaaaattgtaattgtgttattaatgtgttccatttcattggatacaccccaaattgaggggaatggaaaattgagtaaatgagttgtatttgatg 261807  T
Q  155 gaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccatt 237  Q
    |||||| ||||||||||  |||||||||||||| | |||||||||||| |||||||||||| || | || |||||||||||||    
T  261808 gaatggattccatcacatcccattccattccatct-ttttttacaaaatcaaacaatggaatatagctctatcccactccatt 261889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 242
Target Start/End: Complemental strand, 29429044 - 29428892
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccattt 189  Q
    |||||||||| |||||||| |||||||| ||||||| |||||||||||  ||||| ||| ||||||||||| ||||||||   | ||||||||||||||     
T  29429044 cattccattgcatacaccccaaattggagggaatgataaattggaagagagagtgctatgggatggaatggattccatcatgtttcattccattccattc 29428945  T
Q  190 cttttttacaaaaccaaacaatggaacatggttccatcccactccattccatc 242  Q
     ||||||||||| ||||||||||||||||   ||||| ||||| |||||||||    
T  29428944 attttttacaaatccaaacaatggaacataactccataccacttcattccatc 29428892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 35759918 - 35759799
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||| |  ||||||||||||||||  |||||||||||||||||||||||||| |||||||| |  ||||  || || |||||||| | ||||    
T  35759918 tgaaatagaaaaagttgggataaaattgtaattgaattattaatgtgttccattccattgcatacaccccagtttgggagggattaaaaattgaatgaat 35759819  T
Q  140 gagtggtattggatggaatg 159  Q
    ||||||||||||||||||||    
T  35759818 gagtggtattggatggaatg 35759799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 5925125 - 5925251
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccattt 189  Q
    |||||||||| ||||| || || ||||  |||||||||||   |  |||||| || ||||||||||||||| |||||||| | || ||||||| |||| |    
T  5925125 cattccattgcatacatcccaatttgggaggaatgaaaaagctggtgaatgaatgatattggatggaatggattccatcatattctattccataccatat 5925224  T
Q  190 cttttttacaaaaccaaacaatggaac 216  Q
      |||||||||||||||||||||||||    
T  5925225 actttttacaaaaccaaacaatggaac 5925251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 23113940 - 23113872
Alignment:
Q  121 aatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccattt 189  Q
    ||||| |||||| |||| |||||||||||| ||||||| ||||||||     |||||||||||||||||    
T  23113940 aatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattccattccattt 23113872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 42366093 - 42365849
Alignment:
Q  13 gcacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaa 112  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42366093 gcacacacacaagaagaaaga-ggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacaccccaaa 42365995  T
Q  113 ttggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaacc-aaacaat 211  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| |||||||    
T  42365994 ttagatggaatgaaaaattggaagaatgaatggtattggatggaatgggttccatcacactccattccattccattcattttttataaaaccaaaacaat 42365895  T
Q  212 ggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  42365894 ggaacatggttccattccattccattccatcactctccatcaatcc 42365849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 50678069 - 50678272
Alignment:
Q  13 gcacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaa 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50678069 gcacacacgcaagaagaaagaagaaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacaccccaaa 50678168  T
Q  113 ttggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatg 212  Q
    |                 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50678169 t-----------------tggaagaatgagtggtattggatagaatgggttccatcacactccattccattccattccttttttacaaaaccaaacaatg 50678251  T
Q  213 gaacatggttccatcccactc 233  Q
    |||||||||||||||||||||    
T  50678252 gaacatggttccatcccactc 50678272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 42934383 - 42934184
Alignment:
Q  61 aaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgg 160  Q
    ||||| ||||| | |||||| ||||||||||||| ||||||||||||  ||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  42934383 aaaatggtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgg 42934284  T
Q  161 gttccatcacactccattccattcc---atttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||    
T  42934283 gttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaatgtggtcccatcccactccattccatcactctccaccaatcc 42934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 41404217 - 41404052
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    |||||||||||||||||| |||||||||||||| |||||||  |||||| ||||||||| |||||||||||||  ||||||||||||||||||||| |||    
T  41404217 ttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttccatcacattcc 41404118  T
Q  176 attccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41404117 attccattccattatttttttacaaaaccaaacaatggaacatggctccatcccactccattccat 41404052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 15581738 - 15581529
Alignment:
Q  53 gcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattgga 152  Q
    ||||||| ||||| ||||| | |  |||| |||||||||||||||||||||||||| |||||||  |||||| |||||||| ||||||  ||||||||||    
T  15581738 gcagggacaaaatagtaattataagattattgtgttccattccattggatacaccccaaattggggggaatggaaaattgggagaatggatggtattgga 15581639  T
Q  153 tggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccatt-----ccatcactct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |  |||||||||||||     ||||||||||    
T  15581638 tggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaatgtggatatatcccactccattccattccatcactct 15581539  T
Q  248 ccatcaatcc 257  Q
    ||||||||||    
T  15581538 ccatcaatcc 15581529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 34969924 - 34969747
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||| |||||||||| |||    |||||||||||||||||||||||||||||||||||||     
T  34969924 attattaatgtattctattccatttgatacaccccaaattgga-ggaatgaaaatttgacttaatgagtggtattggatggaatgggttccatcacactt 34969826  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatgg-aacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    ||||||||||      |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  34969825 cattccattc-----attttttacaaaatcaaacaatggaaacatggtttcatcccactccattccatcactctccatcaatcc 34969747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 7741256 - 7741068
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtgg-tattggatggaatgggttccatcacact 173  Q
    ||||| ||||| ||||||| |||||||| |||   |||||||||| |||||||| ||||   ||||  ||| ||||||| ||||||||||||||||||||    
T  7741256 attatcaatgttttccatttcattggattcacttcaaattggatgaaatgaaaatttggttaaatggatgggtattggaaggaatgggttccatcacact 7741157  T
Q  174 ccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccac-----tccattccatcactctccatcaatcc 257  Q
    | |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||     ||||||||| ||||||||||||||||    
T  7741156 ctattccattccatttattttttacaaaactaaacaatggaacatggttacatcccactctattccattccaccactctccatcaatcc 7741068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 16302758 - 16302852
Alignment:
Q  147 attggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  16302758 attggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaacaatggaatatggttttatcccactccattccat 16302852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 48046548 - 48046435
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||| |||| |||||||||||||||||||||| ||||| |  |||||||||| ||||   |||| |||||||||||||||||| ||||||||||||||    
T  48046548 attatttatgtattccattccattggatacaccccaaattagggggaatgaaaatttggcttaatgggtggtattggatggaatgagttccatcacactc 48046449  T
Q  175 cattccattccatt 188  Q
    ||||||||||||||    
T  48046448 cattccattccatt 48046435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 49764985 - 49764865
Alignment:
Q  137 aatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccat 236  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||| | |||  |||||| ||||| |||||||||||||||||||  |||||||||||     
T  49764985 aatgagtggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaacatggttttatcccactccac 49764886  T
Q  237 tccatcactctccatcaatcc 257  Q
    |||||  |  |||||||||||    
T  49764885 tccattccattccatcaatcc 49764865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 39793727 - 39793621
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    ||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||    |||||||  ||||||||||||||  |||||| |||||     
T  39793727 attattaatgtgttccatttcattggatacaccctaaattagaaggaatgaaaaattgactaaatgagttttattggatggaatgacttccattacactt 39793628  T
Q  175 cattcca 181  Q
    |||||||    
T  39793627 cattcca 39793621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 19551166 - 19551297
Alignment:
Q  83 tgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccat 182  Q
    |||||| ||||||||||  ||||||| ||||| |  |||||||||||| | | ||  | |||||||||||||||||| |||||||||   || ||| |||    
T  19551166 tgtgttacattccattgcttacaccccaaattcgg-ggaatgaaaaatagaaggagagggtggtattggatggaatgagttccatcatgttctatttcat 19551264  T
Q  183 tccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||| ||||||||||||||||||| ||||||    
T  19551265 tccattacttttttacaaaaccaaacgatggaa 19551297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 42117145 - 42117269
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| || ||||| |||||||||||||| | |  || |||||||||||||||||| |||||||   | ||||| ||| ||||||      
T  42117145 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattca 42117244  T
Q  191 ttttttacaaaaccaaacaatggaa 215  Q
     ||||| |||| |||||||||||||    
T  42117245 ctttttgcaaatccaaacaatggaa 42117269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 49741449 - 49741325
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| || ||| | |||||||||||||| | |  || |||||||||||||||||| |||||||   | ||||| ||| ||||||      
T  49741449 attccattggatacaccccaatttgaagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattcg 49741350  T
Q  191 ttttttacaaaaccaaacaatggaa 215  Q
     ||||| |||| |||||||||||||    
T  49741349 ctttttgcaaatccaaacaatggaa 49741325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 50108993 - 50109123
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtatt--ggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||| |||||||| ||||||   | ||||| |||||||||||  | |||||||   ||||||||||| ||||||||   ||||||||| |||||    
T  50108993 cattccattgcatacaccccaaattgagggaaatgataaattggaagagagggtggtatatgggatggaatggattccatcatgttccattccactccat 50109092  T
Q  188 ttcttttttacaaaaccaaacaatggaacat 218  Q
    |  ||| ||||||| ||||||||||||||||    
T  50109093 tcatttcttacaaatccaaacaatggaacat 50109123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 50139554 - 50139681
Alignment:
Q  88 tccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||| ||||| || |||||||||||||| ||||||  || |||   ||||||| ||||||||||| |||||||  | ||||||||| |||||    
T  50139554 tccattccattgcatacatcccaaattggatggaataaaaaataagaggaagtggtggtataggatggaatggattccatcttattccattccactccat 50139653  T
Q  188 ttcttttttacaaaaccaaacaatggaa 215  Q
    |    ||||||||| |||||||| ||||    
T  50139654 taaaattttacaaatccaaacaacggaa 50139681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 16302624 - 16302693
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacaccca 109  Q
    |||||||||||| |||  || ||||||||||| | | |||||||||||||||||||||| ||||||||||    
T  16302624 tgaaatagaaaaagcaatgacaaaattgtaattataatattaatgtgttccattccatttgatacaccca 16302693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 23473841 - 23473769
Alignment:
Q  143 tggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||| ||||||||||| ||||||||   ||||||||||||||||   |||||||| | |||||||||||||    
T  23473841 tggtatgggatggaatggattccatcatgttccattccattccattcaatttttacacatccaaacaatggaa 23473769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 31991631 - 31991733
Alignment:
Q  86 gttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattcc 185  Q
    ||||||||||||||||||| ||| |||||||  |||||||  ||||| | ||||||||||||| | ||||||| | ||||||     |||||||||||||    
T  31991631 gttccattccattggatac-ccccaaattggggggaatgaggaattgaaggaatgagtggtatagaatggaattgattccattgtgttccattccattcc 31991729  T
Q  186 attt 189  Q
    ||||    
T  31991730 attt 31991733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 30190811 - 30190888
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccat 167  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||    
T  30190811 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccat 30190888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 7521303 - 7521239
Alignment:
Q  42 aaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacac 106  Q
    ||||||||||   ||||| |||||||||||    |||||||||||||||||||||||| ||||||    
T  7521303 aaatagaaaaaatagggacaaaattgtaattgtgttattaatgtgttccattccattgaatacac 7521239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 12441134 - 12441194
Alignment:
Q  177 ttccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccatt 237  Q
    |||||||||||| |||||||| |||||||||||||  |||   |||| |||||||||||||    
T  12441134 ttccattccattccttttttagaaaaccaaacaataaaactacgttctatcccactccatt 12441194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 38503 - 38728
Alignment:
Q  26 aagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatga 125  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  38503 aagaaagaagaaggtgaaatagaaaatgtagggataaaattgtaataaaattattaatgtgttccattccattggatacatcccaaattgaatggaatga 38602  T
Q  126 aaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttcca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  38603 aaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattc-----cttttttacaaaaccaaacaatggaacatggttcca 38697  T
Q  226 tcccactccattccatcactctccatcaatc 256  Q
    |||||||||||||||||||||||||||||||    
T  38698 tcccactccattccatcactctccatcaatc 38728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 27011368 - 27011144
Alignment:
Q  39 gtgaaatagaaaatgcagggataaaatt-gtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaaga 137  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27011368 gtgaaatagaaaatgcagggataaaatttgtaataaaattattaatgtgtttcattccattggatacaccccaaattggatggaatgaaaaattggaaga 27011269  T
Q  138 atgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27011268 atgagtggtattggatggaatgggttccatcacactccattccattccattccttttttacaaaaccaaacaatggaacatggttccatcccactccatt 27011169  T
Q  238 -----ccatcactctccatcaatcc 257  Q
         ||||||||||||||||||||    
T  27011168 ccattccatcactctccatcaatcc 27011144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 42029249 - 42029430
Alignment:
Q  61 aaaattgtaataaaattattaatgtg-ttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  42029249 aaaatggtaattatattattaatgtggttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatg 42029348  T
Q  160 ggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42029349 ggttccatcatactccattccattccatcccttttttacaaaaccaaacaatggaatgtggctccatcccactccattccat 42029430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 39439839 - 39440005
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||| |||| |||||||||||||||||||||| |||||||  |||||||||| ||||   |||| |||||||||||||||||| ||||||||||||||    
T  39439839 attatttatgtattccattccattggatacaccccaaattggggggaatgaaaatttggtttaatgggtggtattggatggaatgagttccatcacactc 39439938  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||||||||||||  |||||| |||||||||||||||||| ||||||  |||||||||||||||||    
T  39439939 cattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattccat 39440005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 25045557 - 25045382
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||  | |||||||||| ||||||  | ||||||||||||||||||||||||||||||| | || ||||  |||||| ||||||||| ||||    
T  25045557 tgaaatagaaatagtagggataaaaatgtaattgagttattaatgtgttccattccattggatacacaccaatttgggaggaatggaaaattggatgaat 25045458  T
Q  140 gagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  25045457 gagtggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa 25045382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 32278528 - 32278405
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatg 154  Q
    |||||||||| ||||||  | |||||||||||||| |||||||||||||||||| || ||||  |||||| ||||||||| |||||||||||||||||||    
T  32278528 agggataaaaatgtaattgagttattaatgtgttcaattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatg 32278429  T
Q  155 gaatgggttccatcacactccatt 178  Q
    ||||| ||||||||||| ||||||    
T  32278428 gaatgagttccatcacattccatt 32278405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 25909507 - 25909352
Alignment:
Q  61 aaaattgtaataaaattattaatgt-gttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||||||||| | |||||||| || |||||||| ||||| |||||||| |||||||   |||||||||||||||| | || ||||||||||||||||||    
T  25909507 aaaattgtaattacattattaaggttgttccatttcattgcatacaccccaaattggggagaatgaaaaattggaatagtgggtggtattggatggaatg 25909408  T
Q  160 ggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
     ||||||| | | | |||| |||||||||   || |||||||||||||||||||||    
T  25909407 agttccattatatttcatttcattccattcacttattacaaaaccaaacaatggaa 25909352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 29765165 - 29765363
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattgga-agaa 138  Q
    ||||||||||||  |||||||||||| ||| | | |||||| ||| |||| ||||||||| |||||||| ||||| |  | |||||||| ||||| | ||    
T  29765165 tgaaatagaaaa--cagggataaaatcgtagttacattatttatgggttcgattccattgcatacaccccaaatttggggtaatgaaaatttggagaaaa 29765262  T
Q  139 tgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattc 238  Q
    || ||||||||||||||||| | ||||||||  ||||||||||||||| || | ||||||||| |||||||||||||  | | | |||||||||||||||    
T  29765263 tg-gtggtattggatggaattgattccatcatgctccattccattcca-ttatgttttacaaagccaaacaatggaatctaggttcatcccactccattc 29765360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 40024811 - 40024906
Alignment:
Q  57 ggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattgga 152  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| | |||||||||| ||||||    
T  40024811 ggataaagttgtaatattattattaatgtgttccattccattggatacaccccaaattgggaggaatgaaaaattgaaggaatgagtggcattgga 40024906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 24374193 - 24374318
Alignment:
Q  81 aatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattcc 180  Q
    |||||||||||||||  | ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||| | ||||| ||||||||||     
T  24374193 aatgtgttccattccgctcgatacaccctaaattggatggaatgaaaaattggctaagtgggtggtattggatggaatggataccatcccactccattc- 24374291  T
Q  181 attccatttcttttttacaaaaccaaacaatggaac 216  Q
             |||||||||||||||||||||||||||    
T  24374292 ---------cttttttacaaaaccaaacaatggaac 24374318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 14567978 - 14567825
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| |||||||  |||||||||||||| | |  ||  ||||||||||||||||| |||||||   | ||||||||| ||||||      
T  14567978 attccattggatacaccccaaattggggggaatgaaaaattgaaggtttggatggtattggatggaatgagttccattgtattccattccactccattca 14567879  T
Q  191 ttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcac 244  Q
     ||||| |||| ||||||||||||| ||  ||   | |||||||||||||||||    
T  14567878 ctttttgcaaatccaaacaatggaatataattatgtaccactccattccatcac 14567825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 44713394 - 44713191
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggta------- 147  Q
    ||||| ||||||||||| | || ||| || |||||||||||||| ||||||||| ||||| |  |||||||||||||||   |||||||||||           
T  44713394 agggacaaaattgtaattatataattgatatgttccattccattagatacaccccaaatttg-gggaatgaaaaattggttaaatgagtggtattggaat 44713296  T
Q  148 ttggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat-----c 242  Q
    |||||||||||| |||||||||          |||||||||  ||||||||||||| |||||||||||  ||| |||||||| |||||||||||     |    
T  44713295 ttggatggaatgagttccatca----------cattccattaattttttacaaaactaaacaatggaatgtggctccatccctctccattccattccacc 44713206  T
Q  243 actctccatcaatcc 257  Q
    |||||||||||||||    
T  44713205 actctccatcaatcc 44713191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 23420399 - 23420240
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaat-gaaaaattggaagaatgagtggtattggat 153  Q
    ||||| |||||||||||    ||||||||||||| |||| ||||| |||||||| | | |||  ||||| | ||||||||   |||  ||||||||||||    
T  23420399 agggacaaaattgtaattgtgttattaatgtgtttcatttcattgcatacaccccacaatgggaggaattggaaaattggttaaataggtggtattggat 23420300  T
Q  154 ggaatgggttccatcacactccattccattccatt--tcttttttacaaaaccaaacaat 211  Q
    | |||| ||||||| |||||||| ||||||| |||  | |||||||||||||||||||||    
T  23420299 gtaatgagttccattacactccactccattctattccttttttttacaaaaccaaacaat 23420240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 40026083 - 40026151
Alignment:
Q  147 attggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||||||||| |||||| ||||| |||||||||||| |||  |||||||||||| ||||||||||||    
T  40026083 attggatggaataggttccttcacattccattccattctattcattttttacaaaatcaaacaatggaa 40026151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 23466778 - 23466708
Alignment:
Q  142 gtggtattggatggaatgggttccatcacactccattccattccatttc-ttttttacaaaaccaaacaat 211  Q
    ||||||||||||| |||| ||||||| ||||| |||||||||| ||| | |||||||||||||||||||||    
T  23466778 gtggtattggatgcaatgagttccattacactacattccattctattcctttttttacaaaaccaaacaat 23466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 42957387 - 42957239
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||| |||||||||||| |||||| | ||||||||| |||| |||| |||  |||| || | || |||| | | |||| |||||||| ||||    
T  42957387 tgaaatagaaaaagcagggataaaaatgtaattagattattaatatgtttcatttcatctgataaactccaatttgg-taggatgagaaattggatgaat 42957289  T
Q  140 gagtggtattggatggaatgggttccatcacactccattccattccattt 189  Q
    || |||| ||||||||| || ||| ||||| ||||| || |||| |||||    
T  42957288 gaatggtgttggatggattgagtttcatcatactccgtttcatttcattt 42957239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 2230101 - 2230191
Alignment:
Q  94 ccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattc 184  Q
    ||||||||||||| | ||||||    |||||||||||||   |||||  |||||||||||| |||||||||||||||| |||||| |||||    
T  2230101 ccattggatacactccaaattgaggagaatgaaaaattgagtgaatggatggtattggatgcaatgggttccatcacattccatttcattc 2230191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 20189773 - 20189695
Alignment:
Q  165 catcacactccattccattccatt----tctttttta--caaaaccaaacaatggaacatggttccatcccactccatt 237  Q
    ||||||||||||||||||| ||||    |||||||||  ||||||||||||| |||||||||||| |||||||| ||||    
T  20189773 catcacactccattccattgcattctattcttttttatgcaaaaccaaacaaaggaacatggttctatcccacttcatt 20189695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 2266949 - 2266864
Alignment:
Q  156 aatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||| ||| ||||||| ||||||| |||||| | ||||||||||||||||||||||   |  |||  |||||||||||||||||||    
T  2266949 aatgagtttcatcacattccattcaattccactacttttttacaaaaccaaacaataagatgtggcaccatcccactccattccat 2266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 49368372 - 49368469
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||   |||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  49368372 cattccattggatacctcccaaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 49368469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 44246543 - 44246309
Alignment:
Q  13 gcacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  44246543 gcacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaagtattaatgtgttccattccattggatacaccccaaa 44246444  T
Q  113 ttggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatg 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||     ||||| |||||||||||||||||    
T  44246443 ttggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccatcacactccattccattc-----cttttatacaaaaccaaacaatg 44246349  T
Q  213 gaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    || |||||||||||     ||||||||||||||||||||||||||    
T  44246348 gagcatggttccat-----tccattccatcactctccatcaatcc 44246309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 28219183 - 28219002
Alignment:
Q  61 aaaattgtaataaaattattaatgtg-ttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  28219183 aaaatggtaattatattattaatgtggttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatg 28219084  T
Q  160 ggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  28219083 ggttccatcacactccattccattccatcccttttttacaaaaccaaacaatggaatgtggctccatcccactccattccat 28219002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 28199158 - 28199333
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||  | |||||||||| ||||||    ||||||||||||||||| ||||||||||||||| || ||||  |||||| ||||||| | ||||    
T  28199158 tgaaatagaaatagtagggataaaaatgtaattgggttattaatgtgttccatcccattggatacaccccaatttgggaggaatggaaaattgaatgaat 28199257  T
Q  140 gagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||||||||||||||||  ||||||||||| ||||||| |||||||| |  |||| ||||||||||||||||||    
T  28199258 gagtggtattggatggaataagttccatcacattccattcgattccattacaattttccaaaaccaaacaatggaa 28199333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 10354405 - 10354218
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||| |||| |||||||||||||||||||||  || ||||  |||||||||| ||||   |||| |||||||||||||||||| ||| |||| |||||    
T  10354405 attatttatgtattccattccattggatacaccttaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagtttcatcgcactc 10354306  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat-----cactctccatcaatcc 257  Q
    |||||||||||||| ||||||| ||||| |||||||| ||| ||||||  |||| ||||||||||||     ||||||||||||||||    
T  10354305 cattccattccattccttttttgcaaaatcaaacaatagaatatggttttatcctactccattccattccaccactctccatcaatcc 10354218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 55 - 255
Target Start/End: Original strand, 1499181 - 1499382
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatg 154  Q
    ||||| |||||||||||   ||||| ||||  |||||||||||||||||||||  |||||||  | ||| |||||||||  |||||| ||||||||||||    
T  1499181 agggacaaaattgtaattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattggatg 1499280  T
Q  155 gaatgggttccatcacactccattccattccatttcttttt-tacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatca 253  Q
    |||||  |||||||||||| ||||||||||||||| ||||| ||||||| |||||||| |||  ||| | |||| || |||||||||||||| |||| ||    
T  1499281 gaatgaattccatcacactgcattccattccatttttttttatacaaaagcaaacaatagaatgtggcttcatctcaatccattccatcactatccacca 1499380  T
Q  254 at 255  Q
    ||    
T  1499381 at 1499382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 7444718 - 7444822
Alignment:
Q  137 aatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||  ||| |  ||||||||||||    
T  7444718 aatgagtggtattggatggaatgggttccatcacactccattccattccattcattttttagaaaaccaaacaatggaatgtggatatatcccactccat 7444817  T
Q  237 tccat 241  Q
    |||||    
T  7444818 tccat 7444822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 17999928 - 18000107
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    |||||||||| ||||||||||| |||||||||| |||||||| ||| |||||| ||||   ||||||||||||||||| |||||| ||||||||||||||    
T  17999928 ttattaatgtattccattccatcggatacaccccaaattggaggga-tgaaaatttggcttaatgagtggtattggatagaatggattccatcacactcc 18000026  T
Q  176 attccattccatttcttt-----tttacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    ||||||||| ||| | ||     || | ||||||||| |||| |||||||||||||     ||||||||||||||||||||||||||    
T  18000027 attccattcaattccattcatatttcataaaaccaaa-aatgaaacatggttccat-----tccattccatcactctccatcaatcc 18000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 20717593 - 20717690
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  20717593 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 20717690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 6476878 - 6476805
Alignment:
Q  168 cacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||||||| ||  | |||||||||  ||||||||||||  ||| || ||||||| |||||||||    
T  6476878 cacactccattccattccgttcatcttttacaaattcaaacaatggaatgtggctctatcccaccccattccat 6476805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 12388 - 12587
Alignment:
Q  61 aaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgg 160  Q
    ||||| ||||| | |||||| ||||||||||||| ||||||||||||  ||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  12388 aaaatggtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgg 12487  T
Q  161 gttccatcacactccattccattcc---atttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||    
T  12488 gttccatcacactccattccattccattattttttttttacaaaaccaaacaatggaatgtggtcccatcccactccattccatcactctccaccaatcc 12587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 4943692 - 4943514
Alignment:
Q  61 aaaattgtaataaaattattaatgtg-ttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||| ||||| | |||||||||||| ||||||||||||||| |||||| ||||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  4943692 aaaatggtaattatattattaatgtggttccattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatg 4943593  T
Q  160 ggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattc 238  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4943592 ggttccatcacactccattccattccatcccttttttacaaaaccaaacaatggaatatggctccatcccactccattc 4943514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 257
Target Start/End: Complemental strand, 30085085 - 30084868
Alignment:
Q  40 tgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaat 139  Q
    |||||||||||  | |||||||||| ||||||  | ||||||||||||||||||||||||||||||||| || ||||  |||||| ||||||||| ||||    
T  30085085 tgaaatagaaatagtagggataaaaatgtaattgagttattaatgtgttccattccattggatacaccccaatttgggaggaatggaaaattggatgaat 30084986  T
Q  140 gagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattcc 239  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| |  |||| ||||||||||||||||||  ||  || || |||  |||||||    
T  30084985 gagtggtattggatggaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaatctgactctattccatcccattcc 30084886  T
Q  240 atcactctccatcaatcc 257  Q
    | ||||||||||||||||    
T  30084885 accactctccatcaatcc 30084868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 11617384 - 11617218
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||| |||| |||||||||||||||||||| | || ||||  |||||||||| ||||   |||| |||||||||||||||||| ||||||||||||||    
T  11617384 attatttatgtattccattccattggatacacactaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagttccatcacactc 11617285  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||||||||||||  |||||| |||||||||||||||||| ||||||  |||||||||||||||||    
T  11617284 cattccattccattcattttttgcaaaaccaaacaatggaatatggttttatcccactccattccat 11617218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 9159586 - 9159405
Alignment:
Q  75 attattaatgtgttccattccattggat--acacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacac 172  Q
    ||||| |||||||||||||| |||||||  |||||  ||||| |  |||||| || ||||||  |||| ||||||||||||||||||||||||||||||     
T  9159586 attatcaatgtgttccattctattggatgcacacctcaaattagggggaatggaagattggataaatgggtggtattggatggaatgggttccatcacat 9159487  T
Q  173 tccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||    
T  9159486 tccattcctttccatt--ttttttacaaaaccaaacaatggaacatggctctatcccactcca-tccatcactcttcaccaatcc 9159405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 5247872 - 5248031
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||| ||    
T  5247872 attattaatgtgttccattctattgggtacaccttaaattggatggaatggaaaattggttgaatgagtggtattggattgaatgggttccatcacattc 5247971  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||        ||| |||||||||||||||||||||||||  ||  || ||||||||| |||||||    
T  5247972 catt-------tttttttttttacaaaaccaaacaatggaatgtgactctatcccactcaattccat 5248031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 7505998 - 7506129
Alignment:
Q  110 aaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaaca 209  Q
    |||||||  |||||| ||||||||   |||||||||||||||||||||| | ||||||||||||| ||| |||||||||  |||||||||||||||||||    
T  7505998 aaattggggggaatggaaaattggttaaatgagtggtattggatggaattgattccatcacactctatttcattccattaattttttacaaaaccaaaca 7506097  T
Q  210 atggaacatggttccatcccactccattccat 241  Q
    ||||||  ||| |  |||||||||||||||||    
T  7506098 atggaatgtggctttatcccactccattccat 7506129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 32233137 - 32233013
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| || ||||| |||||||||||||| | |  || |||||||||||||||||| |||||||   | ||||||||| ||||||      
T  32233137 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccattccactccattca 32233038  T
Q  191 ttttttacaaaaccaaacaatggaa 215  Q
     ||||| |||| |||||||||||||    
T  32233037 ctttttgcaaatccaaacaatggaa 32233013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 29293312 - 29293199
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    ||||||||||| |||||||||| ||||||| |||||| ||||  |||||||||| |||    ||||| ||| |||||||||| ||||||||||| |||||    
T  29293312 attattaatgtattccattccactggatacccccaaa-ttggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccactc 29293214  T
Q  175 cattccattccattt 189  Q
    | |||||||||||||    
T  29293213 cgttccattccattt 29293199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 13191724 - 13191821
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  13191724 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 13191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 30118 - 30283
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    |||||||||||||||||| |||||||||||||| |||||||  |||||| ||||||||| |||||||||||||  ||||||||||||||||||||| |||    
T  30118 ttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttccatcacattcc 30217  T
Q  176 attccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30218 attccattccattatttttttacaaaaccaaacaatggaacatggctccatcccactccattccat 30283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 21263547 - 21263728
Alignment:
Q  61 aaaattgtaataaaattattaatgtg-ttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  21263547 aaaatggtaattatattattaatgtggtttcattccattcgatacaccccaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatg 21263646  T
Q  160 ggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  21263647 ggttccatcacactccatcccattccatcccttttttacaaaaccaaacaatggaatgtggctccatcccactccattccat 21263728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 46944206 - 46944014
Alignment:
Q  65 ttgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttc 164  Q
    ||||||| | |||||||||||| | ||||||||||||||||||| ||||||| ||||||| |||||||  | ||||||||||||||||||||||| ||||    
T  46944206 ttgtaattatattattaatgtgctacattccattggatacaccccaaattgggtggaatggaaaattgacaaaatgagtggtattggatggaatgagttc 46944107  T
Q  165 catcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcactctccatcaatcc 257  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||||  | | || |||||| ||||||||||||| ||||| ||||||    
T  46944106 catcacactccattccattccattcattttttacataaccaaacaatggaatgttgatctatcccattccattccatcacactccaccaatcc 46944014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 50859317 - 50859151
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||||| || ||||   |||| ||||||||||||||||||  |||||||||||||    
T  50859317 attattaatgtgttccattccattggatacaccccaaattgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattccatcacactc 50859218  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||| ||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50859217 cattccatcccactctttttttacaaaaccaaacaatggaacatgcttccatcccactccattccat 50859151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 22405187 - 22405023
Alignment:
Q  75 attattaatgtg-ttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacact 173  Q
    |||||||||||| |||||||||||||||||||| | ||||||| ||||||| ||||||| | |||||| ||||||||||||||||| |||||||||||||    
T  22405187 attattaatgtggttccattccattggatacactccaaattgggtggaatggaaaattgaaggaatgattggtattggatggaatgagttccatcacact 22405088  T
Q  174 ccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattc 238  Q
    ||||||||||||||   |||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  22405087 ccattccattccatcctttttttacaaaaccaaacaatggaatgtggctccatcccactgcattc 22405023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 35292195 - 35292008
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||| |||| |||||||||||||||||||||| |||||||| | |||||||| ||||   |||| |||||||||||| ||||| ||| ||||||||||    
T  35292195 attatttatgtattccattccattggatacaccccaaattggaggaaatgaaaatttggcttaatgggtggtattggattgaatgagttacatcacactc 35292096  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat-----cactctccatcaatcc 257  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||  |||||||||||||||||     ||||||||||||||||    
T  35292095 cattccattccattccttttttgcaaaaccaaacaatggaatatggttttatcccactccattccattccaccactctccatcaatcc 35292008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 35033776 - 35033936
Alignment:
Q  55 agggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatg 154  Q
    |||||||||| ||||||    |||||||||||||||||||||||||||||| || || ||||  |||||| ||||||||| |||||||||||||||||||    
T  35033776 agggataaaaatgtaattgggttattaatgtgttccattccattggatacatcctaatttgggaggaatggaaaattggatgaatgagtggtattggatg 35033875  T
Q  155 gaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    ||||| ||||||||||| |||||||||||||||| |  |||| ||||||||||||||||||    
T  35033876 gaatgagttccatcacattccattccattccattacaattttgcaaaaccaaacaatggaa 35033936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 41809872 - 41810042
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    ||||||||| |||||||||||||| ||||| || |||||||  |||||| ||||||||| |||||||||||||   |||||||||||||||||||| |||    
T  41809872 ttattaatgcgttccattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatggaatgggttccatcacattcc 41809971  T
Q  176 attccattccatttc-----ttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    ||||||||| ||| |     |||||||||||||||||||||||||||||  || |||||||||||||||||    
T  41809972 attccattcaattccactatttttttacaaaaccaaacaatggaacatgactctatcccactccattccat 41810042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 31227843 - 31227683
Alignment:
Q  79 ttaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccatt 178  Q
    ||||||| |||||||||||||||||||| | || ||||  |||||||||||||||   |||||||||||||||||||||||  |||||||||||| ||||    
T  31227843 ttaatgtattccattccattggatacactccaatttggg-ggaatgaaaaattggttaaatgagtggtattggatggaatgatttccatcacacttcatt 31227745  T
Q  179 ccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattcca 240  Q
    ||||||||||  ||||||||||||||||||| || || |||  || ||||| ||||||||||    
T  31227744 ccattccattcattttttacaaaaccaaacattgaaatatgactctatccccctccattcca 31227683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 41223640 - 41223828
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtatt-ggatggaatgggttccatcacact 173  Q
    |||||||  |||||||||||||||||||||  || || ||||  ||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||    
T  41223640 attattagagtgttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacact 41223739  T
Q  174 ccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccac-----tccattccatcactctccatcaatcc 257  Q
    |||||||||||||||  ||||||||| ||||||||||||| |  ||| |  |||||||     ||||||||||||||||||||||||||    
T  41223740 ccattccattccattcattttttacataaccaaacaatgggatgtggatatatcccactccattccattccatcactctccatcaatcc 41223828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 3121310 - 3121191
Alignment:
Q  143 tggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat- 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||  |||||||||||||||||     
T  3121310 tggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattccatt 3121211  T
Q  242 ----cactctccatcaatcc 257  Q
        ||||||||||||||||    
T  3121210 ccaccactctccatcaatcc 3121191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 48084832 - 48084640
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    ||||||| ||| ||||||||||| | ||||  || |||||||  |||||||||||||||   |||||||||||||||||| |||| ||||||| | ||||    
T  48084832 attattattgtattccattccatcgtatacctcccaaattggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccataagactc 48084733  T
Q  175 cattcc-----attccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat-----cactctccatcaatcc 257  Q
    ||||||     |||| |||  |||||||||||||||||||||||||  ||||| ||||||||||||||||||     ||||||||||||||||    
T  48084732 cattccattcaattctattaattttttacaaaaccaaacaatggaatgtggtttcatcccactccattccattccaccactctccatcaatcc 48084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 4292685 - 4292759
Alignment:
Q  141 agtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  4292685 agtggtattggatggaatgagttccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaa 4292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 26861354 - 26861478
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| || ||||| |||||||||||||| | |  || |||||||||||||||||| |||||||   | ||||| ||| ||||||      
T  26861354 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattca 26861453  T
Q  191 ttttttacaaaaccaaacaatggaa 215  Q
     ||||| |||| |||||||||||||    
T  26861454 ctttttgcaaatccaaacaatggaa 26861478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 4342109 - 4342147
Alignment:
Q  177 ttccattccatttcttttttacaaaaccaaacaatggaa 215  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4342109 ttccattccattacttttttacaaaaccaaacaatggaa 4342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 55841522 - 55841423
Alignment:
Q  61 aaaattgtaataaaattattaatgt-gttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    |||||||||||   ||||||| ||| ||| |||||| ||| |||||| | |||||||| ||||||||||||| ||||| ||  || ||||||||||||||    
T  55841522 aaaattgtaattgcattattattgttgtttcattcctttgcatacactccaaattggaaggaatgaaaaattagaagagtggatgatattggatggaatg 55841423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 25052780 - 25052678
Alignment:
Q  110 aaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaaca 209  Q
    ||||||||||||||||||||   ||||||   |||||||| |||| ||||| ||||||||   ||||| ||||||||||    ||||||||| |||||||    
T  25052780 aaattggatggaatgaaaaacatgaagaagtggtggtatttgatgaaatggattccatcatgttccatcccattccattaaaattttacaaatccaaaca 25052681  T
Q  210 atg 212  Q
    |||    
T  25052680 atg 25052678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 55777311 - 55777243
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatg 159  Q
    ||||| ||| |||||| | |||||||| ||||||||||||| ||||| ||  || ||||||||||||||    
T  55777311 attcctttgcatacactccaaattggaaggaatgaaaaattagaagagtggatgatattggatggaatg 55777243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 44099 - 44264
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    ||||||||||||| |||||||||||  |||||  |||||||  |||||| ||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  44099 ttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 44198  T
Q  176 attccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||  ||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  44199 attccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattccat 44264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 77820 - 77985
Alignment:
Q  76 ttattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 175  Q
    ||||||||||||| |||||||||||  |||||  |||||||  |||||| ||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  77820 ttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 77919  T
Q  176 attccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||  ||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  77920 attccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattccat 77985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 28873629 - 28873856
Alignment:
Q  14 cacacacgcaagaagaaagaaggaggtgaaatagaaaatgcagggataaaattgtaataaaattattaatgtgttccattccattggatacacccaaaat 113  Q
    |||| |||||||||| |||||| ||||||||||||||| | ||  |||||||||||||   ||||||||||||||||||||||||  |||||||  ||||    
T  28873629 cacatacgcaagaaggaagaagaaggtgaaatagaaaa-gtagaaataaaattgtaattggattattaatgtgttccattccattaaatacaccttaaat 28873727  T
Q  114 tggatggaatgaaaaatt-ggaagaatgagtgg---tattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaaca 209  Q
    |||| ||||| ||||||| ||| ||| ||||||   ||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  28873728 tggagggaataaaaaatttggatgaaagagtggtggtattggatggaataggttccatcacacaccattccatttcattccttttttacaaaaccaaaca 28873827  T
Q  210 atggaacatggttccatcccactccattc 238  Q
    ||  ||  |||||| ||||||||| ||||    
T  28873828 ataaaatttggttctatcccactctattc 28873856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 257
Target Start/End: Original strand, 42025391 - 42025516
Alignment:
Q  137 aatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccac----- 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||| |  |||||||         
T  42025391 aatgagtggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaatatggatatatcccactccat 42025490  T
Q  232 tccattccatcactctccatcaatcc 257  Q
    ||||||||||||||||||||||||||    
T  42025491 tccattccatcactctccatcaatcc 42025516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 38679888 - 38679725
Alignment:
Q  77 tattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcca 176  Q
    ||||||||| |||||||| ||||||||||||| ||||| |  |||||||||| ||||   ||||||| |||||| |||||||| ||||||||||||||||    
T  38679888 tattaatgtattccattcaattggatacaccccaaatttgg-ggaatgaaaatttggcttaatgagtagtattgaatggaatgagttccatcacactcca 38679790  T
Q  177 ttccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||| |||  ||||||||||||||||||||||||||||| ||  ||| ||||||| |||||    
T  38679789 ttccattctattcattttttacaaaaccaaacaatggaacatgattttatctcactccactccat 38679725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 34924720 - 34924887
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtatt-ggatggaatgggttccatcacact 173  Q
    |||||||  ||||||||||||||| |||||  || || ||||  ||||||||||| ||    ||||||||||||| ||||||||||||||||||||||||    
T  34924720 attattagagtgttccattccattagatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacact 34924819  T
Q  174 ccattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
    |||||||||||||||  ||||||||| ||||||||||||| |  ||| |  |||||||||||||||||    
T  34924820 ccattccattccattcattttttacataaccaaacaatgggatgtggatatatcccactccattccat 34924887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 29844375 - 29844220
Alignment:
Q  88 tccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||| ||||  || ||||||||| |||||||||||  || |||   ||||||| ||||||||||| |||||||| | |||||| || |||||    
T  29844375 tccattccattgcatacctcccaaattggatagaatgaaaaataagaggaagtggtggtataggatggaatggattccatcatattccatttcactccat 29844276  T
Q  188 ttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccatca 243  Q
    |    ||||||||| ||||||||||||| ||| ||||||| |||||||||||||||    
T  29844275 taaaattttacaaatccaaacaatggaatatgattccatctcactccattccatca 29844220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 14112379 - 14112484
Alignment:
Q  137 aatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttac-aaaaccaaacaatggaacatggttccatcccactcca 235  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||| | ||||||||||||| |  ||| |  |||||||||||    
T  14112379 aatgagtggtattggatggaatcggttccatcacactctattccattccattcattttttactataaccaaacaatgggatgtggatatatcccactcca 14112478  T
Q  236 ttccat 241  Q
    ||||||    
T  14112479 ttccat 14112484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 30800270 - 30800196
Alignment:
Q  137 aatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaat 211  Q
    ||||| ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||||||| |||||||    
T  30800270 aatgaatggtattggatggaatgagttccatcacactctatttcattccactccttttttacaaaactaaacaat 30800196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 22531293 - 22531390
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  22531293 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 22531390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 22535978 - 22536075
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  22535978 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 22536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 25993899 - 25993996
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  25993899 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 25993996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 11354902 - 11354778
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    |||||||||||||||||| || ||||| ||||| |||||||| | |  || |||||||||||||||||  |||||||   | ||||| ||| ||||||      
T  11354902 attccattggatacaccccaatttggagggaataaaaaattgaaggtttgggtggtattggatggaatcagttccattgtattccatcccactccattca 11354803  T
Q  191 ttttttacaaaaccaaacaatggaa 215  Q
     ||||| |||| |||||||||||||    
T  11354802 ctttttgcaaatccaaacaatggaa 11354778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 5358200 - 5358320
Alignment:
Q  66 tgtaataaaattattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttcc 165  Q
    |||||| | ||||||| ||| ||||||||||||| |||||||  |||||  |  |||||||||| | ||   ||||||||||||||||| |||  |||||    
T  5358200 tgtaattatattattattgtattccattccattgcatacacctcaaattatagagaatgaaaaaatagatatatgagtggtattggatgaaatttgttcc 5358299  T
Q  166 atcacactccattccattcca 186  Q
    |||||| | ||||| ||||||    
T  5358300 atcacatttcattctattcca 5358320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 20989782 - 20989714
Alignment:
Q  150 ggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacat 218  Q
    ||||||||||| |||||||    ||||||||||||||||  ||||||| ||| | ||||||||||||||    
T  20989782 ggatggaatggattccatcttgttccattccattccattcattttttataaacctaaacaatggaacat 20989714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 221 - 336
Alignment:
Q  126 aaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttcttttttacaaaaccaaacaatggaacatggttcca 225  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||  ||| ||||    
T  221 aaaattgaaggaatgagtggtattggatggaatgggttccatcacactccattccattccatcccatttttacaaaaccaaacaatggaatgtggctcca 320  T
Q  226 tcccactccattccat 241  Q
    |||||||| |||||||    
T  321 tcccactcaattccat 336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 57066 - 56900
Alignment:
Q  75 attattaatgtgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactc 174  Q
    |||||||  |||||||||||||||||||||  || || ||||  ||||||||||| ||    |||||||||||||||||||||| |||||||||||||||    
T  57066 attattagagtgttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtattggatggaattggttccatcacactc 56967  T
Q  175 cattccattccatttcttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
     |||||||||||||  ||||||||| ||||||||||||| |  ||| |  |||||||||||||||||    
T  56966 tattccattccattcattttttacataaccaaacaatgggatgtggatatatcccactccattccat 56900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 10871364 - 10871282
Alignment:
Q  85 tgttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccat 167  Q
    ||||||||||||||| ||||| || ||||||   |||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  10871364 tgttccattccattgcatacatcccaaattgaggggaatgaaaatttggaagagtgagtggtattggatgaaatgggttccat 10871282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 19694550 - 19694679
Alignment:
Q  86 gttccattccattggatacacccaaaattggatggaatgaaaaattggaagaatgag-tggtattggatggaatgggttccatcacactccattccattc 184  Q
    |||||||||||||| || ||||| |||||||  |||||||||||| ||||| ||  | ||| |||||||||||||| |||||| |   |||||||| |||    
T  19694550 gttccattccattgcatgcaccccaaattggggggaatgaaaaat-ggaaggatttgatggaattggatggaatggattccattatgttccattcccttc 19694648  T
Q  185 catttcttttttacaaaaccaaacaatggaa 215  Q
    ||||  |||||| |||| |||||||||||||    
T  19694649 cattaattttttgcaaatccaaacaatggaa 19694679  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 33091271 - 33091175
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattcca 186  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || ||||||||||||||    
T  33091271 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattcca 33091175  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 7365049 - 7365202
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    ||||||||| |||||||| || |||   |||||||||||||| | |  || |||||||||||||||||| | |||||   | ||||| ||| ||||||      
T  7365049 attccattgaatacaccctaatttgaggggaatgaaaaattgaaggtttgggtggtattggatggaatgagatccattgtattccatcccactccattca 7365148  T
Q  191 ttttttacaaaaccaaacaatggaacatggttccatcccactccattccatcac 244  Q
     ||||| |||| ||||||||||||| ||  ||   | |||||||||||||||||    
T  7365149 ctttttgcaaatccaaacaatggaatataattatgtaccactccattccatcac 7365202  T

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Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 9216 - 9365
Alignment:
Q  91 attccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccatttc 190  Q
    ||||||||| ||||  || ||||||||||||||||||| |  || |||   |||| || ||||||||||| |||||||| | || |||||| ||||||      
T  9216 attccattgcatacctcccaaattggatggaatgaaaa-taagaggaagtggtggcataggatggaatggattccatcatattcaattccactccattaa 9314  T
Q  191 ttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 241  Q
      |||||||||  |||||||||||| ||| |||||||||||||||||||||    
T  9315 aattttacaaattcaaacaatggaatatgattccatcccactccattccat 9365  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 21430 - 21527
Alignment:
Q  90 cattccattggatacacccaaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactccattccattccat 187  Q
    |||||||||||||||  || |||||||  ||||||| |||||| | || |||||||||| | ||||||| ||||||||  || |||||||||||||||    
T  21430 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 21527  T

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