View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8503_low_62 (Length: 275)
Name: NF8503_low_62
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20691632 - 20691884
Alignment:
| Q |
1 |
ggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20691632 |
ggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgactgtaa |
20691731 |
T |
|
| Q |
101 |
ccggagttagagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgttgtgaaat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20691732 |
ccggagtttgagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgttgtgaaat |
20691831 |
T |
|
| Q |
201 |
cggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccac |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20691832 |
cggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccac |
20691884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 20667090 - 20667206
Alignment:
| Q |
117 |
agatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgttgtgaaatcggcggagaaggttgg |
216 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| ||||||| |||||| | |||||||| |||||| |||||||| | |||||||||||| |
|
|
| T |
20667090 |
agatggaacggtgtgtccaccgcgtgaaccacgac---caccacgtcctgatcctgcagcattgacggatga---ctgtgaaattgccggagaaggttga |
20667183 |
T |
|
| Q |
217 |
ttacggtgagaatcgggatggtt |
239 |
Q |
| |
|
|| ||| ||| |||||||||||| |
|
|
| T |
20667184 |
ttccggcgaggatcgggatggtt |
20667206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 44507795 - 44507662
Alignment:
| Q |
1 |
ggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgactgtaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| || || ||| ||||||||| |||||||||||||||| || |
|
|
| T |
44507795 |
ggaacggttgaaaccgaactcgaaccagcaacaaccggtgctacgacggatggatgataactagcctgcgctgatgttgacgaagaagcggtgactgcaa |
44507696 |
T |
|
| Q |
101 |
ccggagttagagtggaagatggaacggtgtgtcc |
134 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
44507695 |
ccggagttggagtggaagatggaacggtgtgtcc |
44507662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 44507656 - 44507597
Alignment:
| Q |
194 |
gtgaaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccac |
253 |
Q |
| |
|
|||||||| ||||||| |||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44507656 |
gtgaaatctgcggagagggttcgctacggcaagaatcgggatggtttgcaccacggccac |
44507597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University