View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_64 (Length: 266)
Name: NF8503_low_64
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2755821 - 2755570
Alignment:
| Q |
1 |
gcttttatcaaggatcattttactggttttggcaaagattctgccataatggggtggttggtaggttaattatatgtagatacttgtattttactggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755821 |
gcttttatcaaggatcattttactggttttggcaaagattctgccataatggggtggttggtaggttaattatatgtagatacttgtattttactggttt |
2755722 |
T |
|
| Q |
101 |
tagtacaatgttttcattgacatcattgttattccttctaacnnnnnnnnnnnnnnncatcagaaatcatttttcaagcaattttatggatctgtgacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755721 |
tagtacaatgttttcattgacatcattgttattccttctaactttttcgttttttttcatcagaaatcatttttcaagcaattttatggatctgtgacaa |
2755622 |
T |
|
| Q |
201 |
agttggactatgtgacattaaggcttggtttcattaaggtaagattttagtg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755621 |
agttggactatgtgacattaaggcttggtttcattaaggtaagattttagtg |
2755570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 2747613 - 2747528
Alignment:
| Q |
160 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagat |
245 |
Q |
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| T |
2747613 |
tcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagat |
2747528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 2747776 - 2747699
Alignment:
| Q |
2 |
cttttatcaaggatcattttactggttttggcaaagattctgccataatggggtggttggtaggttaattatatgtag |
79 |
Q |
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| T |
2747776 |
cttttataaagaatcgttttactggttttggcaaaaattatgctataatgggatgggtggtaggttgattatatgtag |
2747699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2373071 - 2372970
Alignment:
| Q |
1 |
gcttttatcaaggatcattttactggttttggcaaagattctgccataatggggtggttggtaggttaattatatgtagatacttgtattttactggttt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| || || |||||||||||||| |
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| T |
2373071 |
gcttttatcaaggatcattttactggttttggcaatgattctgctataatggggtgcttggtaggttaattatatgtagttaattatattttactggttt |
2372972 |
T |
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| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
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|
| T |
2372971 |
ta |
2372970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 2372928 - 2372836
Alignment:
| Q |
160 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtg |
252 |
Q |
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|||||||| | ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
2372928 |
tcagaaataaattttcaagcaattttatggatctatgacaaagttggactatatggcattaaggcttggtttcattaaggtaagattttagtg |
2372836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 55322045 - 55322128
Alignment:
| Q |
160 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaag |
243 |
Q |
| |
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|||| |||| |||||||||||||||||||| ||||||||||| | || ||||| |||||||| ||||||||||||| |||||| |
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| T |
55322045 |
tcagcaatcctttttcaagcaattttatggctctgtgacaaaatcagattatgtcacattaagacttggtttcattacggtaag |
55322128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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