View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_70 (Length: 251)
Name: NF8503_low_70
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36847053 - 36846816
Alignment:
| Q |
1 |
gtttgtattacctcgtcggcggccataccaggcataggccattggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagacca |
100 |
Q |
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| T |
36847053 |
gtttgtattacctcgtcggcggccataccaggcataggccattggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagacca |
36846954 |
T |
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| Q |
101 |
tg----tttgaaagaggacatggttaaattagtgaataaaatgcaattatctgcaaaataagtaaataaaagaagttattcattagtcagtgtgttagca |
196 |
Q |
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| T |
36846953 |
tgcatgtttgaaagaggacatggttaaattagtgaataaaatgcaattatctgcaaaataagtaaataaaagaagttattcattggtcagtgtgttagca |
36846854 |
T |
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| Q |
197 |
aagcaagaggaatatcgaatacatggtgctcatgttat |
234 |
Q |
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| T |
36846853 |
aagcaagaggaatatcgaatacatggtgctcatgttat |
36846816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 36839458 - 36839326
Alignment:
| Q |
20 |
cggccataccaggcataggccattggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatgg |
119 |
Q |
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| T |
36839458 |
cggccaaaccaggcataggcaactggacttgtaagcaggctgtgggaaaagacaagtagaagaaggtagagaccaagaccatgtttgaaggatgacatgg |
36839359 |
T |
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| Q |
120 |
ttaaattagtgaataaaatgcaattatctgcaa |
152 |
Q |
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| T |
36839358 |
ttgaattagtgaatagaatgcaattatctgcaa |
36839326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 36835585 - 36835508
Alignment:
| Q |
43 |
tggacttgtaagcaggctgtgggaaacgacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatggt |
120 |
Q |
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| T |
36835585 |
tggacttgtaaggaggatgtgggaaaagacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatggt |
36835508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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