View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_79 (Length: 237)
Name: NF8503_low_79
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 11225172 - 11225366
Alignment:
| Q |
19 |
aatgtttgatgtgcacctgaatgtaagttggttgtttaattgaaaaggattatgaaaactgatggaaaaagatagctgtaaatatacttttgggtgtgtt |
118 |
Q |
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| T |
11225172 |
aatgtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatatacttttgggtgtgtt |
11225271 |
T |
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| Q |
119 |
ggttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgcgaactgattg |
213 |
Q |
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| T |
11225272 |
gattgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgtgaactgattg |
11225366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 11225365 - 11225565
Alignment:
| Q |
21 |
tgtttgatgtgcacctgaatgtaagttggttgtttaattgaaaaggattatgaaaactgatggaaaaagatagctgtaaatatacttttgggtgtgttgg |
120 |
Q |
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| T |
11225365 |
tgtttaatgtgtacctgaatgtaagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttttgggtgtgttgg |
11225464 |
T |
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| Q |
121 |
ttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgcgaactgattgcttgatg |
220 |
Q |
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| T |
11225465 |
ttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgatg |
11225564 |
T |
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| Q |
221 |
t |
221 |
Q |
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| T |
11225565 |
t |
11225565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 11225024 - 11225156
Alignment:
| Q |
33 |
acctgaatgtaagttggttgtttaattgaaaaggattatgaaaactgatggaaaaagatagctgtaaatatacttttgggtgtgttggttgattaaatgt |
132 |
Q |
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| T |
11225024 |
acctgattgtaagctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttggttgattatatgt |
11225123 |
T |
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| Q |
133 |
tgtgcatgtagtacaagtgttacacattgttga |
165 |
Q |
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| T |
11225124 |
tgttcatgtagtataagagttacacattgttga |
11225156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 11224891 - 11225000
Alignment:
| Q |
90 |
atagctgtaaatatacttttgggtgtgttg-gttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgta |
188 |
Q |
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| T |
11224891 |
atagttgtaagtatacttttgggtgtgttaagttgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgattaca |
11224989 |
T |
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| Q |
189 |
aaatcaaaatt |
199 |
Q |
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| T |
11224990 |
aaatcaaaatt |
11225000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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