View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_8 (Length: 581)
Name: NF8503_low_8
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 155 - 565
Target Start/End: Complemental strand, 1109698 - 1109284
Alignment:
| Q |
155 |
tcataagaggtgtagttgactgtgttgtcaacttctttggacttaactttcaagttgttgatttgttcgcgagacaatttaaaaatcaacactgctgcat |
254 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
1109698 |
tcataagaggtgtagttgattgtgttgtcaacttctttggacttaactttcaagttgttgatttgttcgcgagaaaatttaaaaatcgacactgctgcat |
1109599 |
T |
|
| Q |
255 |
tctctctcaaagccaggttttggaggcttttcaggagtctgcatggatggtggaggtttgtattcaatgtggtcgaaaatgggtcgtggcggatcgcgag |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
1109598 |
tctctctcaaagccaggttttggaggcttttcaggagtctgcatggatggtggaggtttgtattcgatgtggtcgaaaatgggtcgtggcggatcgcaag |
1109499 |
T |
|
| Q |
355 |
catggagtactgtcctgtcaatgaatggtggaatggaaacatctaggccacgagttacatctaaccatgtattgatgaagtgaagaccagaagttccatc |
454 |
Q |
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|| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1109498 |
cacggggtactgtcctttcaatgaatggtggaatggaaacatctaggccacgagttacatctaaccatatattgatgaagtgaagaccagaagttccatc |
1109399 |
T |
|
| Q |
455 |
tgctgcgtaatggtgcatcccagcaccaagtgagactcctccacattt----tatgtaacctgaacaaatattattctgacaagtttctcaaaacatttt |
550 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
1109398 |
tgctatgtaatggtgcatcccagcaccaagtgagactccttcacatttgaagtatgtaaccagcacaaatattattctgacaagtttctcaaaacatttt |
1109299 |
T |
|
| Q |
551 |
accttttgaaaattg |
565 |
Q |
| |
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||||||| ||||||| |
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| T |
1109298 |
accttttaaaaattg |
1109284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 155 - 502
Target Start/End: Complemental strand, 1130268 - 1129925
Alignment:
| Q |
155 |
tcataagaggtgtagttgactgtgttgtcaacttctttggacttaactttcaagttgttgatttgttcgcgagacaatttaaaaatcaacactgctgcat |
254 |
Q |
| |
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|||||||| |||||| || ||||||| | |||||||||||||| ||||||| |||||| ||||||||||| |||||| |||||| | ||||||||| |
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| T |
1130268 |
tcataagaactgtagtggattgtgttgccggcttctttggacttagctttcaatgtgttgagttgttcgcgagtcaatttgaaaatcgaaactgctgcac |
1130169 |
T |
|
| Q |
255 |
tctctctcaaagccaggttttggaggcttttcaggagtctgcatggatggtggaggtttgtattcaatgtggtcgaaaatgggtcgtggcggatcgcgag |
354 |
Q |
| |
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||| |||| ||||||| || | || | |||||| ||| ||||||||||| |||||||| ||||| ||||||| ||||| || |||||||| | |
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| T |
1130168 |
catctg----agcctggttttgttggttgttgatgagtcttcattgatggtggaggcttgtattcgatgtgatcgaaaacaggtcggggaggatcgcggg |
1130073 |
T |
|
| Q |
355 |
catggagtactgtcctgtcaatgaatggtggaatggaaacatctaggccacgagttacatctaaccatgtattgatgaagtgaagaccagaagttccatc |
454 |
Q |
| |
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|| |||||| ||||| ||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
1130072 |
cacggagtagtgtccggtcaatgaatggtggcatggaaacgtctaggccacgagctacatctgaccatgtattgatgaaatgaagaccagaagctccatc |
1129973 |
T |
|
| Q |
455 |
tgctgcgtaatggtgcatcccagcaccaagtgagactcctccacattt |
502 |
Q |
| |
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|||| | | ||| ||||| ||| ||||||||||||||||||||||||| |
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|
| T |
1129972 |
tgctacatgatgttgcataccaacaccaagtgagactcctccacattt |
1129925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1110489 - 1110404
Alignment:
| Q |
19 |
catcacaattaacaagtgttattcaataactattgtacagaacagtgtttatttgatagctatgtttcagcatttaacaagttttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1110489 |
catcacaattaacaagtgttattcaataactattgtacagaacagtgtttatttgatagctatgtttcagcatttaacaagttttc |
1110404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 1110412 - 1110380
Alignment:
| Q |
129 |
caagttttcctatgcaaagggtgatatcataag |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
1110412 |
caagttttcctatgcaaagggtgatatcataag |
1110380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 838945 - 838982
Alignment:
| Q |
50 |
attgtacagaacagtgtttatttgatagctatgtttca |
87 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |
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| T |
838945 |
attgtacataaaagtgtttatttgatagctatgtttca |
838982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 296 - 502
Target Start/End: Original strand, 31965731 - 31965937
Alignment:
| Q |
296 |
catggatggtggaggtttgtattcaatgtggtcgaaaatgggtcgtggcggatcgcgagcatggagtactgtcctgtcaatgaatggtggaatggaaaca |
395 |
Q |
| |
|
||||||||||| || |||| |||||| ||| || ||||| ||||||||||||||||| |||||||||| ||||| ||||| |||||||| |||||| || |
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| T |
31965731 |
catggatggtgaagatttgaattcaacgtgatcaaaaattggtcgtggcggatcgcgggcatggagtagtgtccgatcaataaatggtgggatggaagca |
31965830 |
T |
|
| Q |
396 |
tctaggccacgagttacatctaaccatgtattgatgaagtgaagaccagaagttccatctgctgcgtaatggtgcatcccagcaccaagtgagactcctc |
495 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| | |||||| |||||| ||| | ||||||||||||||| |||||||||||||||||| |
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| T |
31965831 |
tctagaccacgagttacatctgaccatgtattgatgaagtgaaaagcagaagctccatcggctacataatggtgcatcccaacaccaagtgagactcctc |
31965930 |
T |
|
| Q |
496 |
cacattt |
502 |
Q |
| |
|
||||||| |
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|
| T |
31965931 |
cacattt |
31965937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 31965600 - 31965679
Alignment:
| Q |
155 |
tcataagaggtgtagttgactgtgttgtcaacttctttggacttaactttcaagttgttgatttgttcgcgagacaattt |
234 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||| || |||| |||||||||||||||||| |
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|
| T |
31965600 |
tcataagtggtgtagttgattgtgttgccaacttctttggacttatctttcaacttattgagttgttcgcgagacaattt |
31965679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 294 - 458
Target Start/End: Original strand, 27357000 - 27357164
Alignment:
| Q |
294 |
tgcatggatggtggaggtttgtattcaatgtggtcgaaaatgggtcgtggcggatcgcgagcatggagtactgtcctgtcaatgaatggtggaatggaaa |
393 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||| ||||| || ||||| ||||||||||||| ||| | | ||||||| ||||| ||||||| |
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|
| T |
27357000 |
tgcattgatggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaa |
27357099 |
T |
|
| Q |
394 |
catctaggccacgagttacatctaaccatgtattgatgaagtgaagaccagaagttccatctgct |
458 |
Q |
| |
|
|||| |||||||||| ||||||| |||||| ||||||||||||||||||||| | |||||||||| |
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|
| T |
27357100 |
catcaaggccacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgct |
27357164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 294 - 458
Target Start/End: Complemental strand, 45410163 - 45409999
Alignment:
| Q |
294 |
tgcatggatggtggaggtttgtattcaatgtggtcgaaaatgggtcgtggcggatcgcgagcatggagtactgtcctgtcaatgaatggtggaatggaaa |
393 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||| ||||| || ||||| ||||||||||||| ||| | | ||||||| ||||| ||||||| |
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|
| T |
45410163 |
tgcattgatggtggaggcttgtattcaatgtgatcaaaaacaggtcgaggtggatcacgagcatggagtagtgttcggccaatgaacggtgggatggaaa |
45410064 |
T |
|
| Q |
394 |
catctaggccacgagttacatctaaccatgtattgatgaagtgaagaccagaagttccatctgct |
458 |
Q |
| |
|
|||| |||||||||| ||||||| |||||| ||||||||||||||||||||| | |||||||||| |
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|
| T |
45410063 |
catcaaggccacgagctacatctgaccatgaattgatgaagtgaagaccagatgctccatctgct |
45409999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 25377880 - 25377938
Alignment:
| Q |
19 |
catcacaattaacaagtgttattcaataactattgtacagaacagtgtttatttgatag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
25377880 |
catcacaattaacaagtgttattcaataaatattgtacagtacagtgtttatttgatag |
25377938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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