View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_82 (Length: 234)
Name: NF8503_low_82
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 48424200 - 48424413
Alignment:
| Q |
1 |
gtcataagtcattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagca |
100 |
Q |
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| T |
48424200 |
gtcataagtcattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagca |
48424299 |
T |
|
| Q |
101 |
gataacagcagtgtcggcttgccagaactgctagactcttgggtcacagcagctctccactccgtaatgagtaaaccaaagttggttttatctgtgtcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48424300 |
gataacagcagtgtcggcttgccagaactgctagactcttgggtcacagcagctctccactccgtaatgagtaaaccaaagttggttttatctgtgtcgg |
48424399 |
T |
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| Q |
201 |
aggatggatactcc |
214 |
Q |
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|||||||||||||| |
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| T |
48424400 |
aggatggatactcc |
48424413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 51482692 - 51482905
Alignment:
| Q |
1 |
gtcataagtcattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagca |
100 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||| ||| ||||| |||||||| | ||| | | |||||||||||||||||||| |||||| |
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| T |
51482692 |
gtcataggtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtacttcaatggagttatctgatcagagccacccactgcagca |
51482791 |
T |
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| Q |
101 |
gataacagcagtgtcggcttgccagaactgctagactcttgggtcacagcagctctccactccgtaatgagtaaaccaaagttggttttatctgtgtcgg |
200 |
Q |
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| T |
51482792 |
gataacagcagtgctggcttgccggaactcctagattctgtggtcacggcagctctccattccctgattagcgaaccaaagttggccttttctgtgtctg |
51482891 |
T |
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| Q |
201 |
aggatggatactcc |
214 |
Q |
| |
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|||||||||||||| |
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| T |
51482892 |
aggatggatactcc |
51482905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 51467782 - 51467993
Alignment:
| Q |
1 |
gtcataagtcattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagca |
100 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||| | | | |||||||||||||||||||| |||||| |
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| T |
51467782 |
gtcataggtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagca |
51467881 |
T |
|
| Q |
101 |
gataacagcagtgtcggcttgccagaactgctagactcttgggtcacagcagctctccactccgtaatgagtaaaccaaagttggttttatctgtgtcgg |
200 |
Q |
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||||||| |||| ||||||| | ||||| ||||||||| || |||||||||||||||||| | |||||||||||||||||||| | || | ||| | |
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| T |
51467882 |
gataacaacagttccggcttgtcggaactcctagactctgcggccacagcagctctccactctttgatgagtaaaccaaagttggtcatttcagcgtctg |
51467981 |
T |
|
| Q |
201 |
aggatggatact |
212 |
Q |
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|||||||||||| |
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|
| T |
51467982 |
aggatggatact |
51467993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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