View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_83 (Length: 229)
Name: NF8503_low_83
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_83 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14698825 - 14698597
Alignment:
| Q |
1 |
tgttgtagagactcaagatggcatcactgtaatgtttcacggtttgatcaacgcttcacgtacatctcaaaatggtttttcttctgaggtgggttaccct |
100 |
Q |
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| T |
14698825 |
tgttgtagagactcaagatggcatcactgtaatgtttcacggtttgatcaacgcttcacgtacatctcaaaatggtttttcttctgaggtgggttaccct |
14698726 |
T |
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| Q |
101 |
ttttctttctcactcctcttgatccttctctaggctcgtttgattgcactagcttctaacagagttgattttgaatataactagtgtgtttggttttgct |
200 |
Q |
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| T |
14698725 |
ttttctttctcactcctcttgatccttctctaggctcgtttgattgcactagcttctaacagagttgattttgaatataactagtgtgtttggttttgct |
14698626 |
T |
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| Q |
201 |
gtgagtcctttgacataatttgattttaa |
229 |
Q |
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| T |
14698625 |
gtgagtcctttgatataatttgattttaa |
14698597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17650074 - 17650301
Alignment:
| Q |
1 |
tgttgtagagactcaagatggcatcactgtaatgtttcacggtttgatcaacgcttcacgtacatctcaaaatggtttttcttctgaggtgggttaccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650074 |
tgttgtagagactcaagatggcatcactgtaatgtttcacggtttgatcaacgcttcacgtacatctcaaaatggtttttcttctgaggtgggttaccct |
17650173 |
T |
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| Q |
101 |
ttttctttctcactcctcttgatccttctctaggctcgtttgattgcactagcttctaacagagttgattttgaatataactagtgtgtttggttttgct |
200 |
Q |
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| T |
17650174 |
ttt-ctttctcactcctcttgacccttctctaggctcgtttgattgcactagcttctaacagagttgattttgaatataactagtgtgtttggttttgct |
17650272 |
T |
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| Q |
201 |
gtgagtcctttgacataatttgattttaa |
229 |
Q |
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| T |
17650273 |
gtaagtcctttgatataatttgattttaa |
17650301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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