View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_85 (Length: 227)
Name: NF8503_low_85
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 14698596 - 14698390
Alignment:
| Q |
1 |
atgaattgattttttattaaaattgatttgtatgtaaaacattgtgtgttttgacttttgatgcattcaagtaaaactgaattgaatcatagtttgagag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14698596 |
atgaattgattttttattaaaattgagttgtatgtaaaacattgtgtgttttgacttttgatgcattcaagtaaaactgaattgaatcatagtttgagag |
14698497 |
T |
|
| Q |
101 |
taaaaatcaaatttggaagcaaaagctataaatttcagcttcgagttagaattcattttggaggcataagtgattctacataagaatattttaaacatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14698496 |
taaaaatcaaatttggaagcaaaagctataaatttcagcttcgagttagaattcattttggaggcataagtgattctacataagaatattttaaacatgt |
14698397 |
T |
|
| Q |
201 |
ctggaat |
207 |
Q |
| |
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||||||| |
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| T |
14698396 |
ctggaat |
14698390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 17650302 - 17650508
Alignment:
| Q |
1 |
atgaattgattttttattaaaattgatttgtatgtaaaacattgtgtgttttgacttttgatgcattcaagtaaaactgaattgaatcatagtttgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650302 |
atgaattgattttttattaaaattgagttgtatgtaaaacattgtgtgttttgacttttgatgcattcaagtaaaactgaattgaatcatagtttgagag |
17650401 |
T |
|
| Q |
101 |
taaaaatcaaatttggaagcaaaagctataaatttcagcttcgagttagaattcattttggaggcataagtgattctacataagaatattttaaacatgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650402 |
taaaaatcaaatttggaagcaaaagctataaatttcagcttcgagttagaattcattttggaggcataagtgattctacataagaatattttaaacatgt |
17650501 |
T |
|
| Q |
201 |
ctggaat |
207 |
Q |
| |
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||||||| |
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|
| T |
17650502 |
ctggaat |
17650508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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