View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8503_low_9 (Length: 570)
Name: NF8503_low_9
Description: NF8503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8503_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 46237155 - 46236605
Alignment:
| Q |
1 |
gaacgccgacctctgcatataacaatgcatttttactaccatctgagttatgttcacgaagactttttcactttctctttattttaagcaacatggaata |
100 |
Q |
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| T |
46237155 |
gaacgccgacctctgcatataacaatgcatttttactaccatctgagttatgttcacgaagactttttcactttctctttattttaagcaacatggaata |
46237056 |
T |
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| Q |
101 |
catgcaaattaaaacaatttcatatgtcatataacacagacaccggtgaggccaagttgtggatgagttactagtcaagagaaataagtatgttgcatgt |
200 |
Q |
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| T |
46237055 |
catgcaaattaaaacaatttcatatgtcatataacacagacaccggtgaggccaagttgtggatgagttactagtcaagagaaataagtatgttgcatgt |
46236956 |
T |
|
| Q |
201 |
aaatctaatggtctttagtctttaccttcgttatgcatcaaattaaggcatgaaataaaaaattaaacatcaatagtaacaattacattcaaatcaatca |
300 |
Q |
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| T |
46236955 |
aaatctaatggtctttagtctttaccttcgttatgcatcaaattaaggcatgaaataaaaaattaaacatcaatagtaacaattacattcaaatcaatca |
46236856 |
T |
|
| Q |
301 |
agtcaaattgagaatcctaatcatagtcacacatttacttcaataagaaattttttgccaccaagacgttaccaggtacaagttaattaactaaagaaag |
400 |
Q |
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| T |
46236855 |
agtcaaattgagaatcctaatcatagtcacacatttacttcaataagaaattttttgccaccaagacgttaccaggtacaagttaattaactaaagaaag |
46236756 |
T |
|
| Q |
401 |
ctgagaatactgatcatatatatgattgtactagagatcctctcctcataacatatagatgattaccttgacaataaaattgcatgatccagtttatttt |
500 |
Q |
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| T |
46236755 |
ctgagaatactgatcatatatatgattgtactagagatcctctcctcataacatatagatgattaccttgacaataaaattgcatgatccagtttatttt |
46236656 |
T |
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| Q |
501 |
gcagccgagcaagattaaggtgtgccaagtcttccacctatacattcacca |
551 |
Q |
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| T |
46236655 |
gcagccgagcaagattaaggtgtgccaagtcttccacctatacattcacca |
46236605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 41507775 - 41507816
Alignment:
| Q |
17 |
atataacaatgcatttttactaccatctgagttatgttcacg |
58 |
Q |
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| T |
41507775 |
atataacaatgcattgttcctaccaactgagttatgttcacg |
41507816 |
T |
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