View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8504_high_4 (Length: 254)

Name: NF8504_high_4
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8504_high_4
NF8504_high_4
[»] chr2 (3 HSPs)
chr2 (1-173)||(13043662-13043834)
chr2 (14-154)||(29081115-29081254)
chr2 (195-238)||(13043856-13043899)
[»] chr4 (1 HSPs)
chr4 (9-141)||(26261246-26261376)
[»] chr8 (2 HSPs)
chr8 (1-149)||(44718414-44718561)
chr8 (55-154)||(3046577-3046675)
[»] chr5 (3 HSPs)
chr5 (55-154)||(6665871-6665969)
chr5 (65-154)||(32659083-32659171)
chr5 (55-154)||(8871443-8871541)
[»] chr7 (7 HSPs)
chr7 (56-149)||(45280951-45281044)
chr7 (41-141)||(26244870-26244970)
chr7 (55-156)||(22205112-22205212)
chr7 (55-156)||(22229527-22229627)
chr7 (196-236)||(45280854-45280894)
chr7 (197-238)||(22205248-22205289)
chr7 (197-238)||(22229450-22229491)
[»] chr6 (2 HSPs)
chr6 (9-81)||(9150059-9150131)
chr6 (62-154)||(21112287-21112378)
[»] chr3 (5 HSPs)
chr3 (55-154)||(22976562-22976659)
chr3 (62-154)||(959034-959125)
chr3 (62-154)||(25041537-25041629)
chr3 (55-154)||(42864469-42864567)
chr3 (99-154)||(29359931-29359984)
[»] chr1 (2 HSPs)
chr1 (62-154)||(33368977-33369067)
chr1 (14-58)||(29096476-29096520)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13043662 - 13043834
Alignment:
Q  1 aattctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |    
T  13043662 aattctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtgataatggttagaaaagggaataactatcgcttagcg 13043761  T
Q  101 gtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatagtgatgcccgtctctatgta 173  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13043762 gtgacgaggaaccctagtttttgggggttagaagagacaatatgtttttcatagtgctgcccgtctttatgta 13043834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 29081254 - 29081115
Alignment:
Q  14 tgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaact 113  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||  |||||||||||||||     
T  29081254 tgttgatggaggcaatcaatgatgttgatgttgagattgggtcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaacc 29081155  T
Q  114 ctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||| ||||  ||| |||||||||||||||||||||||||||    
T  29081154 cta-ttttctgggattagaagagacaatatgtttttcatag 29081115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 13043856 - 13043899
Alignment:
Q  195 aaaaaggaaatatgtaagaaagaagtatcgatgtcaaagtataa 238  Q
    |||||||||||||||||| |||||||||| |||||| |||||||    
T  13043856 aaaaaggaaatatgtaaggaagaagtatcaatgtcagagtataa 13043899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 26261376 - 26261246
Alignment:
Q  9 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgag 108  Q
    |||| ||||||||||| |||| | ||||||  |||||||||||| | |||||||||||||||||||||| |||||||| ||||  ||  |||||||||||    
T  26261376 ggaggtgttgatggaggcaatcagtgatgcagatgttgagattgaggcaattggtggtaatggttagaagagggaatagctatagctcggtggtgacgag 26261277  T
Q  109 gaactctagtttttgggggttagaagagacaat 141  Q
     |||||||  |||| ||||||||||||||||||    
T  26261276 aaactcta--tttttggggttagaagagacaat 26261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 44718414 - 44718561
Alignment:
Q  1 aattctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtg 100  Q
    |||||| ||||| ||||||||||| |||| | ||||||| |||||||||||  || ||||| |||||| |||||||| ||| ||||||||||  | ||||    
T  44718414 aattctctggaggtgttgatggaggcaatcattgatgctgatgttgagattcagttaattgatggtaaaggttagaagaggaaataactatcgttcagtg 44718513  T
Q  101 g-tgacgaggaactctagtttttgggggttagaagagacaatatgttttt 149  Q
    | |||| |||||| ||| ||||| ||||||||||||||||| ||||||||    
T  44718514 gttgacaaggaacccta-ttttttggggttagaagagacaa-atgttttt 44718561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 3046577 - 3046675
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||||||||||||||||||||| ||||||||  ||||  |  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  3046577 tcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 3046675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 6665969 - 6665871
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||||||||||||||||||||| ||||||||  |||| ||  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  6665969 tcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 6665871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 32659171 - 32659083
Alignment:
Q  65 gtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||||| ||||| | |||||| ||||| ||  ||||||||||| ||| |||  |||||||| |||||||||||||||||||||| ||||    
T  32659171 gtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctatattttgggg-ttagaagagacaatatgtttttgatag 32659083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 8871541 - 8871443
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  8871541 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 8871443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 45281044 - 45280951
Alignment:
Q  56 caattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgttttt 149  Q
    ||||||||| || ||||||||| |||||||||||||| ||  ||||||| ||| ||| ||| |||||  |||||||||||||||||||||||||    
T  45281044 caattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaaccctattttttttgggttagaagagacaatatgttttt 45280951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 26244870 - 26244970
Alignment:
Q  41 atgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaa 140  Q
    |||||||||||| | |||| |||||||||||| | || || ||||||| || | |||||||||| ||| ||| ||| ||||| |||||| ||||||||||    
T  26244870 atgttgagattgaggcaatcggtggtaatggtcaaaagagagaataacgatttgttagtggtgatgagaaaccctacttttttggggttggaagagacaa 26244969  T
Q  141 t 141  Q
    |    
T  26244970 t 26244970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 22205112 - 22205212
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22205112 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22205210  T
Q  155 tg 156  Q
    ||    
T  22205211 tg 22205212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 22229627 - 22229527
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22229627 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22229529  T
Q  155 tg 156  Q
    ||    
T  22229528 tg 22229527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 45280894 - 45280854
Alignment:
Q  196 aaaaggaaatatgtaagaaagaagtatcgatgtcaaagtat 236  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  45280894 aaaaggaaatatgtaagaaagacgtatcggtgtcaaagtat 45280854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 22205248 - 22205289
Alignment:
Q  197 aaaggaaatatgtaagaaagaagtatcgatgtcaaagtataa 238  Q
    ||||||||||||||||| |||||||||| |||| ||||||||    
T  22205248 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataa 22205289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 22229491 - 22229450
Alignment:
Q  197 aaaggaaatatgtaagaaagaagtatcgatgtcaaagtataa 238  Q
    ||||||||||||||||| |||||||||| |||| ||||||||    
T  22229491 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataa 22229450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 9150059 - 9150131
Alignment:
Q  9 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagg 81  Q
    |||| ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  9150059 ggaggtgttgatggaggcaatcagtgatgctgatgttgagattgggtcaatcggtggtaatggatagaaaagg 9150131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 21112378 - 21112287
Alignment:
Q  62 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||  || ||||||||||||||||| |||| ||||    
T  21112378 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttagg-ttagaagagacaatatgattttgatag 21112287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 22976562 - 22976659
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||| ||||||||||||||||| ||| |||| ||||| ||  ||||||||||| ||| ||| |||||  |||||| |||||||||||||||||| ||||    
T  22976562 tcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaaccctatttttt--gggttaaaagagacaatatgtttttgatag 22976659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 959125 - 959034
Alignment:
Q  62 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||||||||||||| || ||||| |||| |||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  959125 gtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 959034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 25041629 - 25041537
Alignment:
Q  62 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    ||||||||||||| ||||| ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  25041629 gtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctattttttttaggttagaagagacaatatgattttgatag 25041537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 42864567 - 42864469
Alignment:
Q  55 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  42864567 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 42864469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 29359984 - 29359931
Alignment:
Q  99 tggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||||||| ||| ||| ||||||||  |||||||||||||||||||||| ||||    
T  29359984 tggtgacgagaaacactattttttggg--ttagaagagacaatatgtttttgatag 29359931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 33369067 - 33368977
Alignment:
Q  62 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 154  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||| ||| | | |||||  ||||||||||||| ||||||||||| ||||    
T  33369067 gtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaacccaatttttt--gggttagaagagataatatgtttttgatag 33368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29096520 - 29096476
Alignment:
Q  14 tgttgatggagacaattaatgatgctaatgttgagattgggtcaa 58  Q
    ||||||||||| |||| | ||||||| ||||||||||||||||||    
T  29096520 tgttgatggaggcaatcagtgatgctgatgttgagattgggtcaa 29096476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University