View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8504_low_11 (Length: 274)
Name: NF8504_low_11
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47350319 - 47350068
Alignment:
| Q |
1 |
gggaaggcccatacagcgtcagtattgcttcaaaggctgttttcatcacataaaaggatttatttacagtgctgaagctgcagaatgtacccgtttaccc |
100 |
Q |
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| T |
47350319 |
gggaaggcccatacagcgtcagtattgcttcaaaggctgttttcatcacataaaaggatttatttacagtgctgaagctgcagaatgtacccgtttaccc |
47350220 |
T |
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| Q |
101 |
atcaatgtgttcactgcacattcaatgcacatattcattcatataataatatcctagcaaaaaaccatatactaaatattatttttactagacatacggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350219 |
atcaatgtgttcactgcacattcaatgcacatattcattcatat---aatatcctagcaaaaaaccatatactaaatattatttttactagacatacggg |
47350123 |
T |
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| Q |
201 |
tcatggtccattaaatgtatcattgtcacgtcttatttcttcatatttgaccttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350122 |
tcatggtccattaaatgtatcattgtcacgtcttatttcttcatatttgaccttt |
47350068 |
T |
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