View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8504_low_12 (Length: 269)
Name: NF8504_low_12
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4389113 - 4389307
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4389113 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatacatcgcta |
4389212 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4389213 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccgtggagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
4389307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4376426 - 4376620
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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|
| T |
4376426 |
aatttcaatcttagctctctcttcggaatcggccaccatccttgtgatacaatcatgtagaccacctttaacttcaatatcatctctaaacccattgcta |
4376525 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4376526 |
tagtgaaactcagggttaagaaaatagcctgttgcatgcaaagggccgtggagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
4376620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4384000 - 4384194
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| ||||||||| ||||||| || |||||||| |||| || |||| |
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| T |
4384000 |
aatttcaattttagctctttcttcgggatcagccaccatcctttttatacaatcgtgtagaccatatttaactacagcatcatctctaaatctatggcta |
4384099 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
4384100 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaggggccgtggagtcgtttgtcccatctttcatcaatgatctcccatagaggcat |
4384194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5726413 - 5726221
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| || ||| |
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|
| T |
5726413 |
aatttcaatcttagctctttcttcgggatcagccaccatccttgttatacaatcatgtagaccaagcttaactttgatatcatctctaaatccaggacta |
5726314 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggc |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |||||||| || ||| ||| |||||||| || || ||||||||| ||||||| |
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|
| T |
5726313 |
tagtgaaattgagggttaagaaaatagcctgcggcatacaaagggctttggagttgtttgtcccatcctttatctatgatctcctgtagaggc |
5726221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4369269 - 4369448
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||| || |||||||| |||| || ||| |
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|
| T |
4369269 |
aatttcaatcttagatctttcttcgtgatcggtcaccatccttgttatacaatgttgtagaccacgtttaactttaacatcatctctaaatccaggacta |
4369368 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgat |
180 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| ||||||||||||| ||| | | ||| |||||||||||| |||||||| |
|
|
| T |
4369369 |
tagtgatattgagcgttaagaaaatagcctgcagcatgcaaagggctatggaattgtttgtcccatctttcatcaatgat |
4369448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4364869 - 4365048
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||| || |||||||||||||||||||| |||||||||| |||||||| || |||||||| |||| || ||| |
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| T |
4364869 |
aatttcaatcttcgatctttctttgtgattggtcaccatccttgttatacaatgttgtagaccacgtttaactttaacatcatctctaaatccaggacta |
4364968 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgat |
180 |
Q |
| |
|
|||||| | |||| ||||||||||||||| || ||||||||||||| ||| | | ||| |||||||||||| |||||||| |
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|
| T |
4364969 |
tagtgatattgagcgttaagaaaatagccagcagcatgcaaagggctatggaattgtttgtcccatctttcatcaatgat |
4365048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4359492 - 4359637
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||| | | |||||||||||||| ||| ||||||||||||||||||| ||||||| | ||||| | ||||||||||| |||| || ||| |
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|
| T |
4359492 |
aatttcaatcctagatctttcttcaggattggctaccatccttgttatacaatgttgtagactatgtttaagtctaatatcatctctaaatccaggacta |
4359591 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggc |
146 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4359592 |
tagtgaaattgagggttaagaaaatatcctgcagcatgcaaagggc |
4359637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 4415416 - 4415226
Alignment:
| Q |
5 |
tcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgctatagt |
104 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||||| ||||||| ||| |||| || ||||||| |
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|
| T |
4415416 |
tcaatcttagctctttcttcgggatcggccaccatccttgttatacaattttctagaccacgtttaactttaatatcacctctaaatccaggactatagt |
4415317 |
T |
|
| Q |
105 |
gaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
195 |
Q |
| |
|
|| | | || ||||||||||||||||| | |||||| |||| || | | ||| ||| || |||| | ||||||||||||| ||||||| |
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|
| T |
4415316 |
gatatttgggattaagaaaatagcctgcagtatgcaaggggctgtggatttgtttgtctaatgtttcattaatgatctcccatggaggcat |
4415226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 4389339 - 4389382
Alignment:
| Q |
226 |
ttcaattacttctaacagttcaaaccaagatatcaaaacaaaaa |
269 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
4389339 |
ttcaattacttcaaacagttcaaaccaagatatcgaaacaaaaa |
4389382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 4384231 - 4384271
Alignment:
| Q |
229 |
aattacttctaacagttcaaaccaagatatcaaaacaaaaa |
269 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4384231 |
aattacttttaacagttcaaaccaagatatcgaaacaaaaa |
4384271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 4376658 - 4376698
Alignment:
| Q |
229 |
aattacttctaacagttcaaaccaagatatcaaaacaaaaa |
269 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
4376658 |
aattacttttaacagttcaatccaagatatcgaaacaaaaa |
4376698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3595750 - 3595557
Alignment:
| Q |
1 |
aatttcaatcttcgctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaacttcaatatcatctccaaatgcatcgcta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||| |
|
|
| T |
3595750 |
aatttcaatcttagctctttcttcaggatcggccaccatccttgttatacaatcatgtagaccacctttaccttcaatatcatctctaaatccatggcta |
3595651 |
T |
|
| Q |
101 |
tagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccatgtagtcgttcgtcccatctttcgtcaatgatctcccatagaggcat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3595650 |
gagtgaaactgagggttaagaaaatagcctgctgcatgcaaagggccgtggagt-gttcgtcccatctttcatcaatgatctcccatagaggcat |
3595557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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