View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8504_low_14 (Length: 241)
Name: NF8504_low_14
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 49372006 - 49372119
Alignment:
| Q |
126 |
cactcaaaataatttgatgttgtaatacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
225 |
Q |
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| T |
49372006 |
cactcaaaataagtt--tgatgtaaaacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
49372103 |
T |
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| Q |
226 |
atgaaaaagaataatc |
241 |
Q |
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|||||||||||||||| |
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| T |
49372104 |
atgaaaaagaataatc |
49372119 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 49371888 - 49371972
Alignment:
| Q |
8 |
tggacatcaatgtaaaaccaatttacaccgagaatgcatgacatcttttctcttcttttcaaccgacgatgcatacaagttaaac |
92 |
Q |
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| T |
49371888 |
tggacgtcaatgtaaaaccaatttacaccgacaatgcatgacatcttttctcttcttttcaaccgatgatgcatacaagttaaac |
49371972 |
T |
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