View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8504_low_2 (Length: 746)
Name: NF8504_low_2
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 14382268 - 14382841
Alignment:
| Q |
1 |
acagcttaggaaacaaaatgaatgcatttagaattagtatacctgatatttcaaaggttctgaagagggttttggttttgcatccattagagagagggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14382268 |
acagcttaggaaacaaaatgaatgcatatagaattagtatacctgatatttcaaaggttctgaagagggttttggttttgcatccattagagagagggaa |
14382367 |
T |
|
| Q |
101 |
gtgg------aattgaagagttgaaagcagagagtgaatgtggggg-cttaatgagaaaagaagagaaaatgccaaaaatgtacttgggttgggaggata |
193 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14382368 |
gtgggagtagaattgaagagttgaaagcagagagtgaatgtggggggcttaatgagaaaagaagagaaaatgccaaaaatgtacttgggttgggaggata |
14382467 |
T |
|
| Q |
194 |
tgcactgtgtgggggaacaaagtgaacaggcatggattgaagtataatgtgacaatgacataagggcactacgctgcttcattattttcccttcaatt-- |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14382468 |
tgcactgtgtgggggaacaaagtgaacaggcatggattgaagtataatgtgacaatgacataagggcactacgctgcttcattattttcccttcaattta |
14382567 |
T |
|
| Q |
292 |
---caatatcactcttctagtaaattagtaatggttttacttttaccttgcttaattttccttttactcacttggttaatgttttgggtataaatttgca |
388 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14382568 |
attcaatatcactcttctagtaaattagtaatagttttacttttaccttgcttaattttccttttactcacttggttaatgttttgggtataaatttgca |
14382667 |
T |
|
| Q |
389 |
cattacaacatttgtatttatttcttccgtcccaaatgatatatcctttttcttttaacaaataaaaatggtatatatgaacaaaattaggaaatctccg |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |
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| T |
14382668 |
cattacaacatttgtatttatttcttccgtcccaaatgatatatcctttttcttttaacaaacaaaaatggtatatataaacaaaatgaggaaatctccg |
14382767 |
T |
|
| Q |
489 |
aaacaaaaggtggcctnnnnnnnttccaaaagtaatatcaaaacaatgttatacaacagttagccaatgtccaaa |
563 |
Q |
| |
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|||||||||||||||| |||| |||| |||||| ||||||||||| |||||||||| |||||| ||||| |
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|
| T |
14382768 |
aaacaaaaggtggcct-aagaaattcctaaagaaatatccaaacaatgttacacaacagttacccaatgcccaaa |
14382841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 598 - 690
Target Start/End: Original strand, 14382838 - 14382930
Alignment:
| Q |
598 |
caaaaacaaagtttatgttactagccttcaaccaccataaataatagtgttttactttatctaacaacttatccatagaactttcaacattag |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
14382838 |
caaaaacaaagtttatgttactagccttcaaccaccataaagaatagtgttttactttatctaacaacttatccatggaacttttaacattag |
14382930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 725
Target Start/End: Original strand, 14383667 - 14383705
Alignment:
| Q |
687 |
ttagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14383667 |
ttagtaaacaatctattgttacgatcattccatatagtc |
14383705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 452 - 725
Target Start/End: Complemental strand, 32645169 - 32644896
Alignment:
| Q |
452 |
aaaaatggtatatatgaacaaaattaggaaatctccgaaacaaaaggtggcctnnnnnnnttccaaaagtaatatcaaaacaatgttatacaacagttag |
551 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||||| | ||| |||| || ||| ||||||| || |||| | |||| |
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|
| T |
32645169 |
aaaaatggtatatataaacaaaattaagaaatctccgaaacacaaggtgtacctgagaaactcctaaagaaacatctaaacaataatacacaataattag |
32645070 |
T |
|
| Q |
552 |
ccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaaccaccataaataatagtgtttta |
651 |
Q |
| |
|
| |||| ||||| |||||||| | ||||||||| ||||||||| ||| ||||||||| |||||||| | |||| |||||||||| |||||||||||| |
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|
| T |
32645069 |
ctaatgcccaaacataacaaagggtttgaccaccacgaagtaaagcaaaagacaaagtttgtgttactaactttcagccaccataaagaatagtgtttta |
32644970 |
T |
|
| Q |
652 |
ctttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32644969 |
ctttatctaacaacttatctatggaattttcgacattagtaaacaatctattgttacgatcatttcatatagtc |
32644896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 649 - 725
Target Start/End: Original strand, 9208249 - 9208325
Alignment:
| Q |
649 |
ttactttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| ||||||| ||||||||| |
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|
| T |
9208249 |
ttactttatctaacaacttatctatggaactttcaacaatagtaaacaatctattattatgatcatttcatatagtc |
9208325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 611
Target Start/End: Original strand, 9207932 - 9208020
Alignment:
| Q |
522 |
aatatcaaaacaatgttatacaacagttagccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagttt |
611 |
Q |
| |
|
|||||| | ||||||||| ||| |||| ||||||| ||||| |||||||| ||| ||||||||||||| ||||| |||||||||||||| |
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|
| T |
9207932 |
aatatctatacaatgttacacatcagt-agccaatacccaaacataacaaaggacttgaccaccatgaaataaagccaaaaacaaagttt |
9208020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 449 - 725
Target Start/End: Original strand, 27296881 - 27297156
Alignment:
| Q |
449 |
aataaaaatggtatatatgaacaaaattaggaaatctccgaaacaaaaggtggcctnnnnnnnttccaaaagtaatatcaaaacaatgttatacaacagt |
548 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| || ||| || | |||| |||| || || | |||||| | ||| |||| |
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|
| T |
27296881 |
aataaaaatggtatatataaacaaaattaggaagtctccgaagcacaagatgtgcctaagaaattcctaaagaaacattcatacaatgcgacacatcagt |
27296980 |
T |
|
| Q |
549 |
tagccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaaccaccataaataatagtgtt |
648 |
Q |
| |
|
||||||||||||||| |||| ||| | ||||||||| ||||||||| |||||||||||||| ||||||||||||| | ||||||||| ||||||| | |
|
|
| T |
27296981 |
tagccaatgtccaaacataagaaagggt-tgaccaccacgaagtaaagccaaaaacaaagtttgtgttactagcctttagccaccataatgaatagtgct |
27297079 |
T |
|
| Q |
649 |
ttactttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
||| |||||||||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
27297080 |
ttattttatctaacaacttatcaatggaactttccacattattaaacaatctattattacgatcattccaaatagtc |
27297156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 531 - 727
Target Start/End: Original strand, 18888426 - 18888621
Alignment:
| Q |
531 |
acaatgttatacaacagttagccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaacc |
630 |
Q |
| |
|
||||||||| || ||||||||||||| || | |||||||| | | ||||||||| ||||||||| ||||| |||||||| |||||||||||| | || |
|
|
| T |
18888426 |
acaatgttacgcatcagttagccaatgctcagacataacaaagggcttgaccaccacgaagtaaagccaaaaccaaagtttgtgttactagcctgaagcc |
18888525 |
T |
|
| Q |
631 |
accataaataatagtgttttactttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtcta |
727 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18888526 |
accataatgaatagttctttactttatcta-caacttatctatggaactttcgacattagtaaacaatctattgttacgatcatttcatatagtcta |
18888621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 552 - 725
Target Start/End: Original strand, 19852318 - 19852491
Alignment:
| Q |
552 |
ccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaaccaccataaataatagtgtttta |
651 |
Q |
| |
|
|||||| ||||| |||| ||| | | |||||| || ||||||||| |||||||||||||| ||||||| ||||| | ||||||||| |||||| |||| |
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|
| T |
19852318 |
ccaatgcccaaacataataaacggcttgaccatcacgaagtaaagccaaaaacaaagtttgtgttactggcctttagccaccataatgcatagtgcttta |
19852417 |
T |
|
| Q |
652 |
ctttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
||||||||||||| ||||| || |||||||| |||||| ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
19852418 |
ctttatctaacaatttatcaattgaactttcgacattattaaacaatctattgttacgataattccaaatagtc |
19852491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 548 - 725
Target Start/End: Complemental strand, 29140446 - 29140267
Alignment:
| Q |
548 |
ttagccaatgtccaaatataacaaaagacctgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaaccacca--taaataatagt |
645 |
Q |
| |
|
|||||||||||||||| | | ||| | | ||||||||||||| |||| ||||||||||||| ||||| ||||||| | |||||| ||| || || |
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|
| T |
29140446 |
ttagccaatgtccaaacaaatcaaggggcgtgaccaccatgaactaaatccaaaaacaaagttagtgttattagccttaagccaccacataacgaactgt |
29140347 |
T |
|
| Q |
646 |
gttttactttatctaacaacttatccatagaactttcaacattagtaaacaatctattgttacgatcattccatatagtc |
725 |
Q |
| |
|
||||||||||||||||||| | | || ||| |||| ||| || |||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
29140346 |
gttttactttatctaacaattggactatggaattttctacactattaaacagtctattattacgatcattccctatagtc |
29140267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 714
Target Start/End: Complemental strand, 27909562 - 27909426
Alignment:
| Q |
578 |
tgaccaccatgaagtaaagtcaaaaacaaagtttatgttactagccttcaaccaccataaataatagtgttttactttatctaacaacttatccatagaa |
677 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| ||||||| || || | |||||||||| |||||||||||||||||||||| || | ||| || ||| |
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|
| T |
27909562 |
tgaccaccatgaactaaagccataaacaaagttgatgttaccggctttaatccaccataaagaatagtgttttactttatctaaaaattgatctatggaa |
27909463 |
T |
|
| Q |
678 |
ctttcaacattagtaaacaatctattgttacgatcat |
714 |
Q |
| |
|
|||| ||||| | || | |||||| |||||||||| |
|
|
| T |
27909462 |
gtttctacatttttgaatagtctattattacgatcat |
27909426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 40281446 - 40281386
Alignment:
| Q |
592 |
taaagtcaaaaacaaagtttatgttactagccttcaaccaccataaataatagtgttttac |
652 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
40281446 |
taaagtcaaaaacaaaattagtgttactagccttaaaccaccattaaaaatagtgttttac |
40281386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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