View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8504_low_4 (Length: 531)

Name: NF8504_low_4
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8504_low_4
NF8504_low_4
[»] chr3 (2 HSPs)
chr3 (147-369)||(49070984-49071204)
chr3 (42-113)||(49070879-49070950)
[»] chr1 (5 HSPs)
chr1 (11-113)||(12912288-12912390)
chr1 (307-386)||(12912512-12912591)
chr1 (153-249)||(12912413-12912509)
chr1 (457-515)||(12913770-12913828)
chr1 (11-83)||(12920926-12920998)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 147 - 369
Target Start/End: Original strand, 49070984 - 49071204
Alignment:
Q  147 tccagcaggtatgctgcttactctaattctcaaggttcatcaagacattcccttccttgatcatctttaatcaaatcttcttcaaccacagcattaacag 246  Q
    ||||||||||  | ||||| ||||||| ||||||||||||||||||||| | ||||| ||||||||||||||||| |||  ||||||||| |||||||||    
T  49070984 tccagcaggtgcgatgcttcctctaatcctcaaggttcatcaagacattgctttcctcgatcatctttaatcaaagctttatcaaccacaacattaacag 49071083  T
Q  247 taaagtaaaagttttgacacgagccagcctctaaaatagtgttatgggaattgtgtaaataacctaagatgattcagtgcagaaaattgtttatttgctc 346  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||| || | || || |||  ||||||||||||||||| ||||||| ||||||||||||||    
T  49071084 taaagtaaaa-ctttgacatgagtcagcctctaaaatagtgtt-tgagtatcgtataagcaacctaagatgattcagggcagaaagttgtttatttgctc 49071181  T
Q  347 aatctttatgttctattgtatat 369  Q
    ||||||| |||| ||||||||||    
T  49071182 aatctttctgttttattgtatat 49071204  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 49070879 - 49070950
Alignment:
Q  42 ttattctgcaactgtgttcttcccgttggtttaaatgaaacaaagattcagctagatacatccgacaaggtt 113  Q
    ||||||||||| || |||||||||  ||| ||||||||||||||| ||  || |||||||||||||||||||    
T  49070879 ttattctgcaattgcgttcttccccctggcttaaatgaaacaaaggttaggcaagatacatccgacaaggtt 49070950  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 12912288 - 12912390
Alignment:
Q  11 atgtaaatattctctaattaccagactcggcttattctgcaactgtgttcttcccgttggtttaaatgaaacaaagattcagctagatacatccgacaag 110  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| ||||    
T  12912288 atgtaaatattctctaattacgagactcggtttattttgcaactgtgttcttcccgttggtttaaatgaaacaaaggttcactaagatacatccggcaag 12912387  T
Q  111 gtt 113  Q
    |||    
T  12912388 gtt 12912390  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 386
Target Start/End: Original strand, 12912512 - 12912591
Alignment:
Q  307 aacctaagatgattcagtgcagaaaattgtttatttgctcaatctttatgttctattgtatatttcatagctactatgaa 386  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| ||||||||||||||||||    
T  12912512 aacctaagatgattcagtgcagaaaattgtttatttgctcgatctttctgatcttttgtatgtttcatagctactatgaa 12912591  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 12912413 - 12912509
Alignment:
Q  153 aggtatgctgcttactctaattctcaaggttcatcaagacattcccttccttgatcatctttaatcaaatcttcttcaaccacagcattaacagtaa 249  Q
    ||||||| ||||| ||| |||||||||||||||  |||||||| ||||||| |||||||||||||||||  ||||||||||||| ||||||||||||    
T  12912413 aggtatgatgcttcctccaattctcaaggttcaataagacattgccttcctcgatcatctttaatcaaagtttcttcaaccacaacattaacagtaa 12912509  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 12913770 - 12913828
Alignment:
Q  457 ctattactacaaatccatcatgatgcttcttccctagctagtaatgtaccaaacaaatt 515  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12913770 ctattactacaaattcatcatgatgcttcttcactagctagtaatgtaccaaacaaatt 12913828  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 12920926 - 12920998
Alignment:
Q  11 atgtaaatattctctaattaccagactcggcttattctgcaactgtgttcttcccgttggtttaaatgaaaca 83  Q
    ||||||||||||||||||| | ||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  12920926 atgtaaatattctctaattgcgagactcattttattttgcaactgtgttcttcccgttggtttaaatgaaaca 12920998  T

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