View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8504_low_6 (Length: 452)
Name: NF8504_low_6
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 5739240 - 5739654
Alignment:
| Q |
15 |
ttattttactaatcgaaaatatgattccgcaatcaaattaggaatttcattatatacatgaa-tcatttacatgtggttagtcgaagtgataagatttag |
113 |
Q |
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| T |
5739240 |
ttattttactaatagaaaatatgattccgcaatcaaattaggaatttcattatatacataaaatcatttacatgtggttagtcgaagtgataagatttag |
5739339 |
T |
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| Q |
114 |
acaccttaaacaaattgttgacgagtctttattcttatgtg--aggaaaattttatttaaaaatggagaacttactttgtatgtcaaacaaatagtcata |
211 |
Q |
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| T |
5739340 |
acaccttaagcaaattgttgacgagtctttattcttatgtgtgaggaaaattttatttaaaaatggagaacttactttgtatgtcaaacaaatagtcata |
5739439 |
T |
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| Q |
212 |
tctattacaaatttacatgtttatccacaaattaggaacatgtcttcgttggactttatgtggcttcttggcgtttttgtttccatctttgtgtnnnnnn |
311 |
Q |
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| T |
5739440 |
tctattacaaatttacatgtttatccac--------aacatgtcttcgttggactttatgtggcttcttggtgtttttgtttccatctttgtgtaaaaaa |
5739531 |
T |
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| Q |
312 |
nctagctttacttaactattcataattatttcttttttctaacaatggcagctgccagagaaactaccacactttccaaaatcaagaggcttcatcaaca |
411 |
Q |
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| T |
5739532 |
actagctttacttaactattcataattatttcttttttctaacaatggcagctgccagagaaactaccacactttccaaaatcaagaggcttcatcaaca |
5739631 |
T |
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| Q |
412 |
aaaacaacaaatacagaggcttc |
434 |
Q |
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| T |
5739632 |
aaaacaacaaatacagaggcttc |
5739654 |
T |
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