View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8504_low_7 (Length: 372)
Name: NF8504_low_7
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 24041367 - 24041706
Alignment:
| Q |
1 |
cctcatcactcaagggaggtatacgcgctcaaactcggtgcacataagcgctatacattagatgttggtatggttccttagagtggggacttacactcta |
100 |
Q |
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| T |
24041367 |
cctcatcactcaagggaggtatacgcgctcaaactcggtgcgcataagcgctatgcattagatgttggtatggttccttagagtggggacttacactcta |
24041466 |
T |
|
| Q |
101 |
acatgtaactgacttcatatatgacatttctcctcatcacttaagggaggtattcccgcacaaatgcagctcacatgaccgttatacgtgagacgttggt |
200 |
Q |
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| T |
24041467 |
acatgtaactg------------------ctcctcatcacttaagggaggtattcccgcacaaatgtggctcacatgaccgttatacgtgagacgttggt |
24041548 |
T |
|
| Q |
201 |
atggttccctagagttgggacttacactttcattggtgtcttggaacctaacattcaaaataataatccccaatgttaattaaagaatcttgagcaaaat |
300 |
Q |
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||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
24041549 |
atggttccctagagtggagacttacactttcataggtttcttggaacctaacattcaaaataataatccccaatattaattaaagaatcttgaacaaaat |
24041648 |
T |
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| Q |
301 |
tcatacatgtaactattctgaataaagaaagatcccaatctataccctaacctgatgt |
358 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
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| T |
24041649 |
tcatacatgtaactattcttaataaagaaagatcccaatctatactctaacctaatgt |
24041706 |
T |
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