View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8504_low_8 (Length: 355)
Name: NF8504_low_8
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8504_low_8 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 4389450 - 4389804
Alignment:
| Q |
1 |
tagaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4389450 |
tagaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacaaagcacatc |
4389549 |
T |
|
| Q |
101 |
aatcagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccgccgattgttttcgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
4389550 |
aatcagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccaccgcttgttttcgca |
4389649 |
T |
|
| Q |
201 |
aacgggctagacttccacgccttggatgtgaatattcttctcaaagctcccttggtctcttgaagacggtctaaagttaagtaagttgtggcacaacaag |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4389650 |
aacgggctagacttccacgccttcgatgtgaatattcttctcaaagctcccttggtctcttgaagacggtctaaagttaagtaagttgtggcacaagaag |
4389749 |
T |
|
| Q |
301 |
taatgccttgtctcaccaaatctgctccttccgtaaacttatgcactagagaaat |
355 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
4389750 |
taatgccttgtctcaccaaatctgttccttccgtaaacttatgcaatagagaaat |
4389804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 355
Target Start/End: Original strand, 4376767 - 4377119
Alignment:
| Q |
3 |
gaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatcaa |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
4376767 |
gaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccagtggctggttcatcgattgtattgaccaaacgaagcacatcaa |
4376866 |
T |
|
| Q |
103 |
tcagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccgccgattgttttcgcaaa |
202 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
4376867 |
gcagaggatttgcgccgttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccacaacttgttttcgcaaa |
4376966 |
T |
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| Q |
203 |
cgggctagacttccacgccttggatgtgaatattcttctcaaagctcccttggtctcttgaagacggtctaaagttaagtaagttgtggcacaacaagta |
302 |
Q |
| |
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| ||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4376967 |
ctggctagacttccatgccatggatgtgaacattcttctcaaagcttccttggtctcatgaagacggtctaaagttaagtaagttgtggcacaagaagta |
4377066 |
T |
|
| Q |
303 |
atgccttgtctcaccaaatctgctccttccgtaaacttatgcactagagaaat |
355 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
4377067 |
atgccttgtctcaccaaatctattccttccgtaaacttatgcaatagagaaat |
4377119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 355
Target Start/End: Original strand, 4384341 - 4384692
Alignment:
| Q |
4 |
aaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatcaat |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4384341 |
aaagaccccttcgtatttcgtctttagctttctccattgcttcataaatgaaaccggtggctggttcatcgattgaattgaccaaacgaagcacatcaag |
4384440 |
T |
|
| Q |
104 |
cagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccgccgattgttttcgcaaac |
203 |
Q |
| |
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|||||||||||| || ||||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || |||||||||||||| |
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| T |
4384441 |
cagaggatttgcgccgttcaaacaattcgtaacatttttccagaactccttgtccaaaaccacatcctcagcaattttcccaccacttgttttcgcaaac |
4384540 |
T |
|
| Q |
204 |
gggctagacttccacgccttggatgtgaatattcttctcaaagctcccttggtctcttgaagacggtctaaagttaagtaagttgtggcacaacaagtaa |
303 |
Q |
| |
|
|| |||||||||| |||| ||||||||| ||| |||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||| |||| |
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| T |
4384541 |
tgggtagacttccatgcctcggatgtgaacattgttctcaaagctcccttggtctcatgaagacagtataaagttaagtaagacgtggcacaacatgtaa |
4384640 |
T |
|
| Q |
304 |
tgccttgtctcaccaaatctgctccttccgtaaacttatgcactagagaaat |
355 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
4384641 |
tgccttgtctcaccaaatctattccttgcgtaaacttatgcaatagagaaat |
4384692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 4415102 - 4414782
Alignment:
| Q |
3 |
gaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatcaa |
102 |
Q |
| |
|
||||||| ||||||||| || |||||||||| ||||| ||| ||||||||| ||||||||||||| ||||| |||||| ||||||||| |||||| |||| |
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|
| T |
4415102 |
gaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatggaaccggtggctggctcatctattgaactgaccaaacaaagcacttcaa |
4415003 |
T |
|
| Q |
103 |
tcagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccgccgattgttttcgcaaa |
202 |
Q |
| |
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||| |||| ||||| ||| ||||||||||| || |||| ||||||| | ||||||||||||||||||| || ||||||| | || ||||| || |
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| T |
4415002 |
ccaggggatgtgcacttttaaaacaaatcatgacgttttcccaaaaccctgtgtccaaaaccacatcctcgacgtatttcccattactcgtcttcgccaa |
4414903 |
T |
|
| Q |
203 |
cgggctagacttccacgccttggatgtgaatattcttctcaaagctcccttggtctcttgaagacggtctaaagttaagtaagttgtggcacaacaagta |
302 |
Q |
| |
|
| |||| ||||||||| ||||||||||||| ||||||||||||||||| | | |||| |||| || ||||||||| ||||| |||||||||||||||| |
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| T |
4414902 |
ctggctggacttccactccttggatgtgaacattcttctcaaagctccttcgttctcatgaatacaacctaaagttaggtaagatgtggcacaacaagta |
4414803 |
T |
|
| Q |
303 |
atgccttgtctcaccaaatct |
323 |
Q |
| |
|
||||| ||| ||||||||||| |
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| T |
4414802 |
atgccctgtttcaccaaatct |
4414782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 5726063 - 5725909
Alignment:
| Q |
27 |
ttagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatcaatcagaggatttgcacctttcaaac |
126 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||| ||||||||| |||||||||||||||| | || |||||||||||||||||| ||| |
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|
| T |
5726063 |
ttagctttctccattgcctcgtaaatgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataac |
5725964 |
T |
|
| Q |
127 |
aaatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaattt |
181 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |||||| || ||||| |
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| T |
5725963 |
aaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattt |
5725909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 4359843 - 4360082
Alignment:
| Q |
28 |
tagctttctccattgcttcataaatgaaaccggtggctggttcatcaattgaattgaccaaacgaagcacatcaatcagaggatttgcacctttcaaaca |
127 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | | ||||| || ||||||||| ||||||||| ||| |||| | ||||| | |||||| |||| |
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|
| T |
4359843 |
tagctttcaccattgcctcataaatgaaacccatagttggtttctcgattgaattggccaaacgaaacacttcaagtataggatatatacctttataaca |
4359942 |
T |
|
| Q |
128 |
aatcataacatttttccaaaactccttgtccaaaaccacatcctcaacaaatttcccgccgattgttttcgcaaacgggctagacttccacgccttggat |
227 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||| ||||||||| ||||||| || || || |||||| ||| ||||||||| |||||||| |
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| T |
4359943 |
aatcataacatttttccaaaaccctttgttcaaaaccgcatcctcaatgtatttcccattcatcgtctttgcaaactcgctggacttccactccttggat |
4360042 |
T |
|
| Q |
228 |
gtgaatattcttctcaaagctcccttggtctcttgaagac |
267 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| ||||||| |
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| T |
4360043 |
ttgaacattcttctcaaagctcctttgttctcatgaagac |
4360082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 4365312 - 4365380
Alignment:
| Q |
104 |
cagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc |
172 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
4365312 |
cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
4365380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 4369706 - 4369774
Alignment:
| Q |
104 |
cagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc |
172 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
4369706 |
cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
4369774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4365211 - 4365263
Alignment:
| Q |
3 |
gaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaa |
55 |
Q |
| |
|
||||||| ||| ||||| | |||||||||| |||||||||| ||||||||||| |
|
|
| T |
4365211 |
gaaagactcctccgtatcttatctttagctctctccattgcctcataaatgaa |
4365263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 14282677 - 14282717
Alignment:
| Q |
141 |
ttccaaaactccttgtccaaaaccacatcctcaacaaattt |
181 |
Q |
| |
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||||| || |||||||||||||||||||||||||| ||||| |
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| T |
14282677 |
ttccataaatccttgtccaaaaccacatcctcaaccaattt |
14282717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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