View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8504_low_9 (Length: 342)

Name: NF8504_low_9
Description: NF8504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8504_low_9
NF8504_low_9
[»] chr3 (1 HSPs)
chr3 (24-324)||(54901068-54901383)
[»] chr4 (5 HSPs)
chr4 (24-324)||(33463757-33464072)
chr4 (278-324)||(51412676-51412722)
chr4 (283-324)||(48569486-48569527)
chr4 (133-190)||(48569590-48569647)
chr4 (216-255)||(48569574-48569613)
[»] chr5 (2 HSPs)
chr5 (24-239)||(6007288-6007503)
chr5 (269-324)||(6007567-6007622)
[»] chr1 (2 HSPs)
chr1 (240-324)||(42645923-42646006)
chr1 (278-319)||(49420877-49420918)
[»] chr7 (2 HSPs)
chr7 (240-319)||(8637-8715)
chr7 (240-324)||(47800062-47800147)
[»] chr6 (1 HSPs)
chr6 (240-324)||(1770667-1770752)
[»] chr2 (8 HSPs)
chr2 (134-190)||(8145728-8145784)
chr2 (283-324)||(30544807-30544848)
chr2 (133-190)||(44154789-44154846)
chr2 (216-255)||(8145712-8145751)
chr2 (216-255)||(44154823-44154862)
chr2 (283-324)||(8145624-8145665)
chr2 (133-190)||(30544911-30544968)
chr2 (283-324)||(44154909-44154950)
[»] chr8 (2 HSPs)
chr8 (240-324)||(33688302-33688385)
chr8 (275-324)||(35839802-35839850)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 54901068 - 54901383
Alignment:
Q  24 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttcttcttattcaagagaggattgaattg 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  54901068 atctaaaactactgcattaatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttcttcttattcaagagaggatcaaattg 54901167  T
Q  124 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtgatggtgcaattgttttattttcgttcaaatggaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901168 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtgatggtgcaattgttttattttcgttcaaatggaa 54901267  T
Q  224 gatgaatcaattgtgaagttgctggttgtggttggt---------------gagagagagttgttaggaaagatagtgtgaaaataattcagtgttgtga 308  Q
    ||||||||||||||||||||||||||||||||||||               |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  54901268 gatgaatcaattgtgaagttgctggttgtggttggtgagagaaagatggaagagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtga 54901367  T
Q  309 gaacatgataacagtg 324  Q
    ||||||||||| ||||    
T  54901368 gaacatgataatagtg 54901383  T

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Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 33464072 - 33463757
Alignment:
Q  24 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttcttcttattcaagagaggattgaattg 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  33464072 atctaaaactactgcattaatgttgaacaaattcttaaattattaaatttttgatggcttttagcatgattttcttcttattcaagagaggatcgaattg 33463973  T
Q  124 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtgatggtgcaattgttttattttcgttcaaatggaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33463972 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtgatggtgcaattgttttattttcgttcaaatggaa 33463873  T
Q  224 gatgaatcaattgtgaagttgctggttgtggttggtgagagagag---------------ttgttaggaaagatagtgtgaaaataattcagtgttgtga 308  Q
    ||||||||||||||||||||||||||||| |||||||||||||||               ||||| ||||||||||||||||||||||||||||||||||    
T  33463872 gatgaatcaattgtgaagttgctggttgttgttggtgagagagagatgcaagagagagaattgtttggaaagatagtgtgaaaataattcagtgttgtga 33463773  T
Q  309 gaacatgataacagtg 324  Q
    ||||||||||| ||||    
T  33463772 gaacatgataatagtg 33463757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 51412722 - 51412676
Alignment:
Q  278 aagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  51412722 aagatagtgtgaaaaaaattcagtgttgagagaacatgataagagtg 51412676  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 48569527 - 48569486
Alignment:
Q  283 agtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  48569527 agtgtcaaaataatttagtgttgtgagaacatgataacagtg 48569486  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 48569647 - 48569590
Alignment:
Q  133 tagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtga 190  Q
    ||||||||||| ||||||| ||||||||||||| ||||  |||||||||| |||||||    
T  48569647 tagaggttaaaattaaacagagaccaagatctggaaatggaagatgaatacattgtga 48569590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 48569613 - 48569574
Alignment:
Q  216 aaatggaagatgaatcaattgtgaagttgctggttgtggt 255  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  48569613 aaatggaagatgaatacattgtgaagttgctggttgtggt 48569574  T

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Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 6007288 - 6007503
Alignment:
Q  24 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttcttcttattcaagagaggattgaattg 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6007288 atctaaaactactgcattaatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttcttcttattcaagagaggatcgaattg 6007387  T
Q  124 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtgatggtgcaattgttttattttcgttcaaatggaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  6007388 aaatttaaatagaggttaaatttaaacaaagaccaagatctgaaaattaaagatggatagattgtgatggtgcaattgttttatcttcgttcaaatggaa 6007487  T
Q  224 gatgaatcaattgtga 239  Q
    ||||||||||||||||    
T  6007488 gatgaatcaattgtga 6007503  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 6007567 - 6007622
Alignment:
Q  269 ttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6007567 ttgtttggaaagatagtgtgaaaataattcagtgttgtgagaacatgataatagtg 6007622  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 42645923 - 42646006
Alignment:
Q  240 agttgctggttgtggttggtg-agagagagttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    |||||| |||||||||||| | ||||||| ||||| || |||||||||||||||  ||||||||||| ||||||||||||| ||||    
T  42645923 agttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaa--attcagtgttgagagaacatgataagagtg 42646006  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 49420877 - 49420918
Alignment:
Q  278 aagatagtgtgaaaataattcagtgttgtgagaacatgataa 319  Q
    ||||||||||||||| |||||||||| | |||||||||||||    
T  49420877 aagatagtgtgaaaaaaattcagtgtggagagaacatgataa 49420918  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 8637 - 8715
Alignment:
Q  240 agttgctggttgtggttggtg-agagagagttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataa 319  Q
    |||||| |||||||||||| | ||||||| ||||| || |||||||||||||||  ||||||||||| |||||||||||||    
T  8637 agttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaaa--attcagtgttgagagaacatgataa 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 47800062 - 47800147
Alignment:
Q  240 agttgctggttgtggttggtg-agagagagttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||||||||||||||||| | ||||||| |||||||  |||||| |||||||| |||||| ||| | ||||||||||||| ||||    
T  47800062 agttgctggttgtggttggaggagagagaattgttagtgaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtg 47800147  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 1770667 - 1770752
Alignment:
Q  240 agttgctggttgtggttggtg-agagagagttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||||||||||||||||| | ||||||| ||||| || |||||| |||||||| |||||| ||| | ||||||||||||| ||||    
T  1770667 agttgctggttgtggttggaggagagagaattgttggggaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtg 1770752  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 8145784 - 8145728
Alignment:
Q  134 agaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtga 190  Q
    |||||||||| ||||||| ||||||||||||||||||  |||||||||| |||||||    
T  8145784 agaggttaaaattaaacagagaccaagatctgaaaatggaagatgaatacattgtga 8145728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 30544848 - 30544807
Alignment:
Q  283 agtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  30544848 agtgtcaaaataattcagtgttgtgagaacatgataatagtg 30544807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 44154789 - 44154846
Alignment:
Q  133 tagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtga 190  Q
    ||||||||||| ||||||| ||||||||||||| ||||  |||||||||| |||||||    
T  44154789 tagaggttaaaattaaacagagaccaagatctggaaatggaagatgaatacattgtga 44154846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 8145751 - 8145712
Alignment:
Q  216 aaatggaagatgaatcaattgtgaagttgctggttgtggt 255  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  8145751 aaatggaagatgaatacattgtgaagttgctggttgtggt 8145712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 44154823 - 44154862
Alignment:
Q  216 aaatggaagatgaatcaattgtgaagttgctggttgtggt 255  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  44154823 aaatggaagatgaatacattgtgaagttgctggttgtggt 44154862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 8145665 - 8145624
Alignment:
Q  283 agtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||| |||||||||||||||| |||||||||||||| ||||    
T  8145665 agtgtcaaaataattcagtgttatgagaacatgataatagtg 8145624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 30544968 - 30544911
Alignment:
Q  133 tagaggttaaatttaaacaaagaccaagatctgaaaattaaagatgaatagattgtga 190  Q
    ||||||||||| ||||||| ||||||||||||| ||||  ||||| |||| |||||||    
T  30544968 tagaggttaaaattaaacagagaccaagatctggaaatagaagatcaatacattgtga 30544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 44154909 - 44154950
Alignment:
Q  283 agtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    ||||| |||||||||| |||||||||||||||||||| ||||    
T  44154909 agtgtcaaaataattcggtgttgtgagaacatgataatagtg 44154950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 33688385 - 33688302
Alignment:
Q  240 agttgctggttgtggttggtg-agagagagttgttaggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    |||||| |||||||||||| | ||||||| ||||| || ||||||||||||||  |||||||||||| |||||||| |||| ||||    
T  33688385 agttgcaggttgtggttggaggagagagaattgttggggaagatagtgtgaaa--aattcagtgttgagagaacataataagagtg 33688302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 35839850 - 35839802
Alignment:
Q  275 ggaaagatagtgtgaaaataattcagtgttgtgagaacatgataacagtg 324  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  35839850 ggaaagatagtgtgaaaa-aattcagtgttgagagaacatgataagagtg 35839802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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