View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_high_1 (Length: 652)
Name: NF8505_high_1
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 1006502 - 1006030
Alignment:
| Q |
17 |
cacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006502 |
cacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtc |
1006403 |
T |
|
| Q |
117 |
ttcgaaattctgnnnnnnnnntaatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttttctcttaa |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006402 |
ttcgaaattctgaaaaaaaa-taatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttttctcttaa |
1006304 |
T |
|
| Q |
217 |
acaaacttgcaaaaccattatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattattttgttgaa |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006303 |
acaaacttgcaaaaccactatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattattttgttgaa |
1006204 |
T |
|
| Q |
317 |
ttttggtttcattaataagcgtagatttatttattgctcttctaacctggatattcttgtttgttgattgtgttatgaacatcttcannnnnnnnnnaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1006203 |
ttttggtttcattaataagcgtagatttatttattgctcttctaacct-gatattcttgtttgttgattgtgttatgaacatcttca-tttttttttaac |
1006106 |
T |
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| Q |
417 |
ttgatagtttggacttattgggcgtgattgatcttgatggagacgatacatctaccactagaagacccaaaattga |
492 |
Q |
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| T |
1006105 |
ttgatagtttggacttattgggcgtgattgatcttgatggagacgatacatctaccactagaagacccaaaattga |
1006030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 557 - 637
Target Start/End: Complemental strand, 1005965 - 1005884
Alignment:
| Q |
557 |
aggatgcatgaatcttcagcgatttatttcagagaattgatttaac-tttgtttttgcactttttatctattaaatttgcat |
637 |
Q |
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| T |
1005965 |
aggatgcatgaatcttcagcgatttatttcagagaattgatttaacttttgtttttgcactttttatctattaaatttgcat |
1005884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 52474664 - 52474553
Alignment:
| Q |
17 |
cacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtc |
116 |
Q |
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|||||||||||||||| |||||| | | |||| |||||||||||| |||| ||| ||| |||||| ||||| ||||||||||||| |||| ||| || |
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| T |
52474664 |
cacctttgaccaaacatcccacttgagcaccttcaatgtatgcattgcctgccaccataatttcatgaacacggctgatgaaatgccccacaacaaaatc |
52474565 |
T |
|
| Q |
117 |
ttcgaaattctg |
128 |
Q |
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|| ||||||||| |
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| T |
52474564 |
tttgaaattctg |
52474553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 38792137 - 38792190
Alignment:
| Q |
75 |
aatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
128 |
Q |
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| T |
38792137 |
aatatcatgagcacggctgacgaaatgctccacaacaaagtcctcgaaattctg |
38792190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 21123631 - 21123679
Alignment:
| Q |
287 |
ttatcatgagagtttcattattttgttgaattttggtttcattaataag |
335 |
Q |
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| T |
21123631 |
ttatcatgtcagttgcattattttgttgaattttggttgcactaataag |
21123679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 5838290 - 5838371
Alignment:
| Q |
47 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
128 |
Q |
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||||||||||||| ||| ||||| | |||||||||||||| ||| || ||||||||| || ||||| || || |||||||| |
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| T |
5838290 |
cttccatgtatgccttgcatgcccctagaatatcatgagctcggacgaggaaatgccccactataaaatcctcaaaattctg |
5838371 |
T |
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