View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_high_3 (Length: 476)
Name: NF8505_high_3
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 21963553 - 21963113
Alignment:
| Q |
18 |
atgtctgattcctgctccttcaaaccatagtactcaagcaattctccttcaagtttcacttccctttcctccaattccttcactagctgacgcaatcgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21963553 |
atgtctgattcctgctccttcaaaccatagtactcaagcaattctccttcaagtttcacttccctttcctccaattccttcactagctgacgcaatcgtt |
21963454 |
T |
|
| Q |
118 |
ctaattcactatcattgtatgccatctcaatttcataaactttgtccttctcgtcgttattttcttcaccaggaaatgataactcaatctctccagataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21963453 |
ctaattcactatcattgtatgccatctcaatttcataaactttgtccttctcgtcgttattttcttcaccaggaaatgataactcaatctctccagataa |
21963354 |
T |
|
| Q |
218 |
aaggtcttcaaattctggtagaatatcatcttcaaaatcattcgctcgattgattatactgttaattaatttaacctcctctttctcctcttcttcctcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21963353 |
aaggtcttcaaattctggtagaatatcatcttcaaaatcattcgctcgattgattatgctgttaattaatttaacctcctctttctcctcttcttcctcc |
21963254 |
T |
|
| Q |
318 |
ccctgcaaaaattaaacaactttcctttacctaatttatttctaacataaaaaatgattaaaattagataaaattcagctacatgaactcacatcatcat |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21963253 |
ccctgcaaaaattaaacaactttcctttacctgatttatttctaacataaaaaattattaaaattagataaaattcagctaaatgaactcacatcatcat |
21963154 |
T |
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| Q |
418 |
tccgttcgaaagaatcatctgtaatactagtgaccttctct |
458 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
21963153 |
tctgttcgaaagaatcatctgtaatactagtgaccttctct |
21963113 |
T |
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Back To:
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 42111470 - 42111538
Alignment:
| Q |
28 |
cctgctccttcaaaccatagtactcaagcaattctccttcaagtttcacttccctttcctccaattcct |
96 |
Q |
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||||||||||||||| ||| |||||||||||||| | || |||||||| ||||| ||||||| ||||| |
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| T |
42111470 |
cctgctccttcaaactataatactcaagcaattcactttgaagtttcatctccctctcctccagttcct |
42111538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 42111662 - 42111751
Alignment:
| Q |
211 |
cagataaaaggtcttcaaattctggtagaatatcatcttcaaaatcattcgctcgattgattatactgttaattaatttaacctcctctt |
300 |
Q |
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|||||| |||| ||||||||| | |||||| ||||| ||||||||||| ||| |||| ||||| ||| ||||| ||||||||||||| |
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| T |
42111662 |
cagatagaaggctttcaaattcagatagaatttcatcgtcaaaatcattagctagattcattatgctgcccattaacttaacctcctctt |
42111751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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