View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8505_low_1 (Length: 790)
Name: NF8505_low_1
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_1 |
 | |
|
| [»] scaffold0351 (7 HSPs) |
| | |
|
| [»] scaffold0002 (5 HSPs) |
| | |
|
| [»] scaffold0263 (2 HSPs) |
| | |
|
| [»] scaffold1364 (2 HSPs) |
| | |
|
| [»] scaffold1266 (1 HSPs) |
| | |
|
| [»] scaffold0063 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0351 (Bit Score: 285; Significance: 1e-159; HSPs: 7)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 18246 - 17855
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaact----------attcattataaattttcactcggctactcggtacgttgccaa |
90 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18246 |
atgatatgttcatctttcatgattgtccaatattcattcatgctaactgtatgccatcattcactataaattttcactcggctactcggtacgttgccaa |
18147 |
T |
|
| Q |
91 |
ccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
18146 |
ccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagaactgagatcatcatcaaggcattactcaa |
18047 |
T |
|
| Q |
191 |
acatacagcttgcactgttggagaaagatgctactattatccttaattattgttattaattattgatattacgtagagattgagatcctatccatcaact |
290 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18046 |
acatacgacttgctctattggagaaagatgctactattatcctcaattattgttagtaattattgatattacatagagattgagattctatccatcaact |
17947 |
T |
|
| Q |
291 |
ttattatcactgataaactcctttactttagtttattcttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17946 |
ttattatcattgataaactcctttactttagtttatttttttgataaagctaaaaattcaataaatgttgtcaggtgcatcctgaacctcat |
17855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 475 - 778
Target Start/End: Complemental strand, 1039 - 740
Alignment:
| Q |
475 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctag |
574 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1039 |
aagcatagaaaatctagtaaagacaatacccttaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtctt---cttatgtctag |
943 |
T |
|
| Q |
575 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttgtag |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |
|
|
| T |
942 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctggtttaataaaaccatctacatgagaatgttgcag |
843 |
T |
|
| Q |
675 |
aaggtactggtcagcttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtca |
774 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
842 |
aa-gtactggtcagcttccttccaattggctagggtaccagctgtgtctatatcacgctccaatgagctttgacaattgctcttgtgagcctcatggtca |
744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 93 - 382
Target Start/End: Complemental strand, 7998 - 7707
Alignment:
| Q |
93 |
aacacttccatgtccttgtatgaaaatgcattttcacatctacattttccca-tagtgggaacgggaagacctgagatcatcatcaagtattgactcaaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
7998 |
aacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccaatagtgggaacgagaagacatgagatcatcatcaagcattgactcaaa |
7899 |
T |
|
| Q |
192 |
catacagcttgcactgttggagaaagatgctactattatccttaattattgttattaattattgatattacgtagagattgagatcctatccatcaactt |
291 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7898 |
catac-gcttgcactgttggagaaagatgctactattatcctcaattattgttagtaattattgatattacgtagagattgagatcctatccatcaactt |
7800 |
T |
|
| Q |
292 |
tattatcactgataaactcctttactttagttta--ttcttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7799 |
tattatcactgataaactcctttcatttagtttattttttttttatacagctaaaaattcaataaatgttgtcaggtgcagcttgaacctcat |
7707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 563 - 778
Target Start/End: Complemental strand, 6242 - 6029
Alignment:
| Q |
563 |
tcttatgtctagttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatg |
662 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6242 |
tcttatgtctagttgaaactctaacataactgttaccatctaaggttttagcagcattcttccagcctttcgtgcctcgtttaataaaaccatcttcatg |
6143 |
T |
|
| Q |
663 |
agaatgttgtagaaggtactggtcagcttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtga |
762 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6142 |
agaat--tgtagaaggtactggtcagcttccttcaaattggctagggtaccaaccgtgtctatagcacgctccaatgagctttgacagttgctcttgtga |
6045 |
T |
|
| Q |
763 |
gcctcatggtcagtat |
778 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6044 |
gcctcatggtcagtat |
6029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 10524 - 10371
Alignment:
| Q |
104 |
gtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10524 |
gtccttgtatgaaaatgcattttcacatctgcattttcccatagtgtgaatggggtgacctgagattatcatcaagcattgactcaaacacacagcttgc |
10425 |
T |
|
| Q |
204 |
actgttggagaaagatgctactattatccttaattattgttattaattattgat |
257 |
Q |
| |
|
|||| || |||| |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
10424 |
actgcaggtgaaacatgctactattatcctcaattattgttagtaattattgat |
10371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 17758 - 17678
Alignment:
| Q |
477 |
gcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagt |
557 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17758 |
gcatagaaaatttagtaaagataattcccctaaaattccaaaggatgcatttcatgcttggtccttaaggcgaacactagt |
17678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8046 - 7998
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaacta |
49 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8046 |
atgatatgttcatctttcatgattgtccaatattcattcatgctaacta |
7998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 471 - 778
Target Start/End: Original strand, 114013 - 114317
Alignment:
| Q |
471 |
gttgaagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgt |
570 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
114013 |
gttgaagcatagaaaatctcgtaaagacaattcccttaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtctt---cttatgt |
114109 |
T |
|
| Q |
571 |
ctagttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgtt |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
114110 |
ctagttgaaactctgacataactgttaccatctaaggttttagcagcattcttcaagcctttcctgcctcatttaataaaaccatcttcatgagaatgtt |
114209 |
T |
|
| Q |
671 |
gtagaaggtactggtcagcttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatg |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114210 |
gtagaaggtactggtcagcttccttcaaattggctagggtaccaaccgtgtctatagcacgctccaatgagctttgacagttgctcttgtgagcctcatg |
114309 |
T |
|
| Q |
771 |
gtcagtat |
778 |
Q |
| |
|
|||||||| |
|
|
| T |
114310 |
gtcagtat |
114317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 93 - 382
Target Start/End: Original strand, 113634 - 113924
Alignment:
| Q |
93 |
aacacttccatgtccttgtatgaaaatgcattttcacatctacattttccca-tagtgggaacgggaagacctgagatcatcatcaagtattgactcaaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
113634 |
aacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccaatagtgggaacgagaagacatgagatcatcatcaagcattgactcaaa |
113733 |
T |
|
| Q |
192 |
catacagcttgcactgttggagaaagatgctactattatccttaattattgttattaattattgatattacgtagagattgagatcctatccatcaactt |
291 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113734 |
catacggcttgcactgttggagaaagatgctactattatcctcaattattgttagtaattattgatattacgtagagattgagatcctatccatcaactt |
113833 |
T |
|
| Q |
292 |
tattatcactgataaactcctttactttagtttattcttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
113834 |
tattatcaatgataaactcctttactttagtttatttttttgataaagctaaaaattcaataaatgttgtcaggtgcatcctgaacctcat |
113924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 96927 - 96657
Alignment:
| Q |
49 |
attcattataaattttcactcggctactcggtacgttgccaaccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagt |
148 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||||| ||||| | | |||||||||||||| || |||||||||||||||| |||||| |||||| |
|
|
| T |
96927 |
attcactataaattttcactcagctactcggtaccttgccagccaacgcctacatgtccttgtatggaagtgcattttcacatctatattttctcatagt |
96828 |
T |
|
| Q |
149 |
gggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgcactgttggagaaagatgctactattatccttaattattgttatta |
248 |
Q |
| |
|
| ||||||| ||||||| ||||||| || ||| |||||||||||| || ||||| ||||||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
96827 |
gtgaacggggagacctg---tcatcattaaacattaactcaaacatacggcatgcaccgttggagaaggatgctactattatcctcaattattgttagta |
96731 |
T |
|
| Q |
249 |
attattgatattacgtagagattgagatcctatccatcaactttattatcactgataaactcctttactttagt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
96730 |
attattgatattacgtagagattgagattctatccatcaactttattatcaattataaactcctttactttagt |
96657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 111057 - 111210
Alignment:
| Q |
104 |
gtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
111057 |
gtccttgtatgaaaatgcattttcacatctgcattttcccatagtgtgaatggggggacctgagatcatcatcaagcattgactcaaacacacagcttgc |
111156 |
T |
|
| Q |
204 |
actgttggagaaagatgctactattatccttaattattgttattaattattgat |
257 |
Q |
| |
|
|||| || |||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
111157 |
actgcaggtgaaagaggctactattatcctcaattattgttagtaattattgat |
111210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 113586 - 113634
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaacta |
49 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113586 |
atgatatgttcatctttcatgattgtccaatattcattcatgctaacta |
113634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 475 - 774
Target Start/End: Original strand, 32928876 - 32929172
Alignment:
| Q |
475 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctag |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
32928876 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcatttcatgcttggtccttgaggtgaacactagtctt---cttatgtctag |
32928972 |
T |
|
| Q |
575 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttgtag |
674 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
32928973 |
ttgaaactctgacagaactgttatcatctaaggttttagcagctttcttccagcctttcctgcctggtttaataaaaccatcttcatgagaatgttgcag |
32929072 |
T |
|
| Q |
675 |
aaggtactggtcagcttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtca |
774 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32929073 |
aagctactggtcagcttccttcaaattggctagggtaccagctgtgtctatatcatgctccaatgagctttgacagttgctcttgtgagcctcatggtca |
32929172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 475 - 671
Target Start/End: Original strand, 4182977 - 4183170
Alignment:
| Q |
475 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctag |
574 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
4182977 |
aagcatagaaaatctagtaaagacaaatcccctaaaagtccaaaggatgcacttcatgcttggtccttaaggcgaacactagtct---tcttatatctag |
4183073 |
T |
|
| Q |
575 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttg |
671 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4183074 |
ttgaaactctgacagagtttttaccatctaaggttttagcagctttcttccggcctttcctgcctagtttaataaaaccagcttcatgagaatgttg |
4183170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 4182827 - 4182881
Alignment:
| Q |
329 |
ttttgataaagctaaaa-attcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4182827 |
ttttgataaagctaaaaaattcaataaatgttttcaggtgcagcctgaacctcat |
4182881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 32928745 - 32928794
Alignment:
| Q |
329 |
ttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacc |
378 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32928745 |
ttttgatatagctaaaaattcaataaatgttgttaggtgcagcctgaacc |
32928794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 17979 - 17655
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaact----------attcattataaattttcactcggctactcggtacgttgccaa |
90 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
17979 |
atgatatgttcatcttt---gattgttcaatattcattcatgctaactgtatgccatcattcattataaattttcactcagcaacttggtaccttgccaa |
17883 |
T |
|
| Q |
91 |
ccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaa |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||| ||||| |||| |
|
|
| T |
17882 |
ccaacacttacatgtccttgtatgaaaatgcattttcacatctacattttcccgtagtgtgaacggga-gacctg---tcatcatcaagcattgattcaa |
17787 |
T |
|
| Q |
191 |
acatacagcttgcactgttggagaaagatgctactattatccttaattattgttattaattattgatattacgtagagattgagatcctatccatcaact |
290 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
17786 |
acatacggcgtgtactgttggagaaagatgctactattatccttaattattgttagtaattattgatattacgtaaagattgagatcctaaccagcaact |
17687 |
T |
|
| Q |
291 |
ttattatcactgataaactcctttactttagt |
322 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
17686 |
taattatcactgataaactcctttactttagt |
17655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 21613 - 21762
Alignment:
| Q |
104 |
gtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgc |
203 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||| || |||| ||||| | || | ||||||| ||||||||||||| || |||||| |
|
|
| T |
21613 |
gtccttgtatgaaaatgcatttttacatctgaattttcccatagtgtaaatggga-gacctaaaattagcatcaagcattgactcaaacacacggcttgc |
21711 |
T |
|
| Q |
204 |
actgttggagaaagatgctactattatccttaattattgttattaattatt |
254 |
Q |
| |
|
|| | |||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
21712 |
acggcaggagaaagatgctactattatcgtcaattattgttagtaattatt |
21762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 498 - 778
Target Start/End: Complemental strand, 38992692 - 38992400
Alignment:
| Q |
498 |
caattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttgaaactctgacataactgtta |
597 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
38992692 |
caattcccctaataagccaatagatgcacttcatgcttgttccttaaggcgaacactagtctt---cttatgtctagttgaaactctgacagtactgtta |
38992596 |
T |
|
| Q |
598 |
ccatctaaggtttta------gcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttgtagaaggtactggtcagc-- |
689 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
38992595 |
ccatctaaggttttacttttagcagctttcttcctgcctttcttgcctggtttaataaaaccatcttcatgagaatgctgcagaaggtactggtcagcag |
38992496 |
T |
|
| Q |
690 |
-------ttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtcagtat |
778 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38992495 |
agtgagtttccttcaaattggctagagtaccatctgtgtctatatcatgctccagagagctttgacagttgctcttgtgagcctcatggtcagtat |
38992400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 522 - 778
Target Start/End: Original strand, 26377859 - 26378120
Alignment:
| Q |
522 |
tgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttgaaactctgacataactgttaccatctaaggttttagcagcattc |
621 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||| |
|
|
| T |
26377859 |
tgcacttcatgcttggtccttaaggcgagcactaatctt---cttatgtctagtttaaattctgacaatactattaccatctaaggttttagcagctttc |
26377955 |
T |
|
| Q |
622 |
ttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttgtagaaggtactggtcagc---------ttccttcaaattggctagggtac |
712 |
Q |
| |
|
|||| |||||||||| || ||||||||| ||||||||| | |||||||| ||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
26377956 |
ttcctgcctttcctgtctggtttaataagaccatcttc-tatgaatgttgcagaaggtacgggtcagcagagtgagtttccttcaaattggctagagtac |
26378054 |
T |
|
| Q |
713 |
caactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtcagtat |
778 |
Q |
| |
|
|| |||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26378055 |
catctgtgtctatatcatgctctagtgacctttgacagttgctcttgtgagcctcatggtcagtat |
26378120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 475 - 671
Target Start/End: Original strand, 22452114 - 22452307
Alignment:
| Q |
475 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctag |
574 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
22452114 |
aagcatagaaaatatagtaaagacaaatcccctaaaagttcaaaggatgcacttcatgcttggtcattaaggcgaacactagtttt---cttatatctag |
22452210 |
T |
|
| Q |
575 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttg |
671 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
22452211 |
ttgaaactctgacagagtttttaccatctaaggttttagcagctttcttccggcctttcttgcctggtttaataaaaccagcttcatgagaatgttg |
22452307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 22451972 - 22452026
Alignment:
| Q |
329 |
ttttgataaagctaaaa-attcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
22451972 |
ttttgataaagctaaaaaattcaataaatgttttcacgtgcagcctgaacctcat |
22452026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 475 - 660
Target Start/End: Original strand, 7905827 - 7906009
Alignment:
| Q |
475 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctag |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||| |
|
|
| T |
7905827 |
aagcatagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaatgcgaacattagtttt---cttatgtctag |
7905923 |
T |
|
| Q |
575 |
ttgaaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttca |
660 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7905924 |
ttgaaactcagacagaactgttaccatctaaggttttagcagctttcttccagcctttcctgcctggtttaataaaaccatcttca |
7906009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 690 - 778
Target Start/End: Original strand, 7906015 - 7906103
Alignment:
| Q |
690 |
ttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtcagtat |
778 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7906015 |
ttccttcaaattggctagggtaccagttgtgtctatatcatgctccaatgagctttaacagttgctcttgtgagcctcatggtcagtat |
7906103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 7905680 - 7905733
Alignment:
| Q |
329 |
ttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7905680 |
ttttgacaaagctaaaaattcaataaatgttgtcaggggcagcctgaacctcat |
7905733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 498 - 778
Target Start/End: Original strand, 3796942 - 3797231
Alignment:
| Q |
498 |
caattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttgaaactctgacataactgtta |
597 |
Q |
| |
|
||||||||| || ||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||| ||| ||| |
|
|
| T |
3796942 |
caattcccccaatattccaatagctgcacttcatgcttggtacttaaggcgaacactagtctt---cttatgtctagttgaaacttttacaatactatta |
3797038 |
T |
|
| Q |
598 |
ccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttc---atgagaatgttgtagaaggtactggtcagc----- |
689 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||||| ||| ||||||||||| || |||| |||||||||||| |||| |||||||| ||| |
|
|
| T |
3797039 |
ccatttaaggttttagcagctttcttcctacctttccttcctggtttaataaaatcagcttcaatatgagaatgttgcagaacgtactggttagcagagt |
3797138 |
T |
|
| Q |
690 |
----ttccttcaaattggctagggtaccaactgtgtctatatcacgctccaatgagctttgacagttgctcttgtgagcctcatggtcagtat |
778 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3797139 |
gagtttccttcaaaatggctagagtaccatctgtgtctatatcatgctccagtgagctttgacagttgctcttgtgagcctcatggtcagtat |
3797231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 478 - 644
Target Start/End: Complemental strand, 27542349 - 27542186
Alignment:
| Q |
478 |
catagaaaatctagtaaagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttg |
577 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27542349 |
catagaatatccagtaaagacaattcccctaaaagtccaaaggatgcacttcatgcttggtccttaaggcgaacactagtct---tcttatgtctacttg |
27542253 |
T |
|
| Q |
578 |
aaactctgacataactgttaccatctaaggttttagcagcattcttccagcctttcctgcctcgttt |
644 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
27542252 |
aaactctgacataactgttgccatctatgattttagcagctttcttctagcctttcctgcctggttt |
27542186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 104 - 291
Target Start/End: Original strand, 6293472 - 6293658
Alignment:
| Q |
104 |
gtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctg-agatcatcatcaagtattgactcaaacatacagcttg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| || |||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
6293472 |
gtccttgtatgaaaatgcattttcacatctacattttcccatggtatgaatggggagacttggagatcatcatcaagcattgactcaaacacaaggcttg |
6293571 |
T |
|
| Q |
203 |
cactgttggagaaagatgctactattatccttaattattgttattaattattgatattacgtagagattgagatcctatccatcaactt |
291 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||||||||| |||||||| |||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
6293572 |
cactgttggagaaaaatgctattattatcctaaattattgttagtaattattcatattacg--cagattgatatccaatccctcaactt |
6293658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 6279057 - 6279235
Alignment:
| Q |
135 |
cattttcccatagtgggaacgggaagacctg-agatcatcatcaagtattgactcaaacatacagcttgcactgttggagaaagatgctactattatcct |
233 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| |||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6279057 |
cattttcccatagtgtgaatggggagacctggagatcatcatgaagcatcgactcaaacacacagcttgcactgttggagaaagatgctactattat-ct |
6279155 |
T |
|
| Q |
234 |
taattattgttattaattattgatattacgtagagattgagatcctatccatcaactttattatcactgataaactccttta |
315 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||| || | ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
6279156 |
caattattgttagtaattattcatattacg--cagattgagatccaattcctcaacttcattatcactaataaactacttta |
6279235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 27542499 - 27542445
Alignment:
| Q |
328 |
cttttgataaagctaaaaattcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27542499 |
ctttttataaagctaaaaattcaataaatgttgttaggtgcagcctgaacctcat |
27542445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 513 - 671
Target Start/End: Complemental strand, 14156291 - 14156136
Alignment:
| Q |
513 |
tccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttgaaactctgacataactgttaccatctaaggtttta |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||| |
|
|
| T |
14156291 |
tccaaaggatgcacttcatgcttggtccttaaggcgaacactagtctt---cttatgtctagttgagactctgacagagttgttaccatttaaggtttta |
14156195 |
T |
|
| Q |
613 |
gcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttg |
671 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
14156194 |
gcagctttcttccagcctttcctacctggtttaataaaaccagcttcatgagaatgttg |
14156136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 14170274 - 14170220
Alignment:
| Q |
329 |
ttttgataaagctaaaaa-ttcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
14170274 |
ttttgataaagctaaaaaattcaataactgttttcaggtgcagcttgaacctcat |
14170220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 511
Target Start/End: Complemental strand, 14170118 - 14170087
Alignment:
| Q |
480 |
tagaaaatctagtaaagacaattcccctaaaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14170118 |
tagaaaatctagtaaagacaattcccctaaaa |
14170087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 494 - 671
Target Start/End: Complemental strand, 35319175 - 35319001
Alignment:
| Q |
494 |
aagacaattcccctaaaattccaaaggatgcacttcatgcttggtccttaaggcgaacactagtcttgatcttatgtctagttgaaactctgacataact |
593 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||| | | |
|
|
| T |
35319175 |
aagacaaatcccctaaaagtccaaaggatgcacttcatgcttggtccttaaggcgaacactagtctt---cttatatttagttgaaattctgacagagtt |
35319079 |
T |
|
| Q |
594 |
gttaccatctaaggttttagcagcattcttccagcctttcctgcctcgtttaataaaaccatcttcatgagaatgttg |
671 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
35319078 |
tttaccatctaagattttagcagctttcttccggcctttcctgcctagtttaataaaaccagcttcatgagaatgttg |
35319001 |
T |
|
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Target: scaffold1364 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 1613 - 1801
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaact----------attcattataaattttcactcggctactcggtacgttgccaa |
90 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
1613 |
atgatatgttcatctttcatgattgtccaatattcattcatgctaactgtatgccatcatccacaataaattttcactcaactactcggtaccttgccaa |
1712 |
T |
|
| Q |
91 |
ccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaag |
179 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||| |
|
|
| T |
1713 |
ccaacacctccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtgtgaacgcggagacctgagatcagcatcaag |
1801 |
T |
|
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Target: scaffold1364; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 322
Target Start/End: Original strand, 1850 - 1889
Alignment:
| Q |
283 |
catcaactttattatcactgataaactcctttactttagt |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
1850 |
catcaactttattatcgctgataaactccttcactttagt |
1889 |
T |
|
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Target: scaffold1266 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold1266
Description:
Target: scaffold1266; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 2054 - 2239
Alignment:
| Q |
50 |
ttcattataaattttcactcggctactcggtacgttgccaaccaacacttccatgtccttgtatgaaaatgcattttcacatctacattttcccatagtg |
149 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||| |||||| ||||| | | |||||||||||||| ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2054 |
ttcactataaattttcactcagctactcaataccttgccagccaacgcctacatgtccttgtatggaaatgcattttcacatctatattttctcatagtg |
2153 |
T |
|
| Q |
150 |
ggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgcactgttggagaaagatgctactattatccttaatt |
238 |
Q |
| |
|
||| ||| ||||||| ||||||| || ||| |||||||||||| || |||| ||||||||| ||||||||| ||||||| |||| |
|
|
| T |
2154 |
tgaatggggagacctg---tcatcattaaacattaactcaaacatacggcatgcatcgttggagaaggatgctactcttatcctcaatt |
2239 |
T |
|
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Target: scaffold0063 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 36090 - 36237
Alignment:
| Q |
104 |
gtccttgtatgaaaatgcattttcacatctacattttcccatagtgggaacgggaagacctgagatcatcatcaagtattgactcaaacatacagcttgc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||| || || ||| ||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
36090 |
gtccttgtatgaaaatgcattttcacatatgc------ccatactgtaaatggggagacctgagatcatcatcaagcattgactcaaacacacggcttgc |
36183 |
T |
|
| Q |
204 |
actgttggagaaagatgctactattatccttaattattgttattaattattgat |
257 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
36184 |
actgcaggagaaagatgctactgttatcctcgattattgttagtaattattgat |
36237 |
T |
|
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Target: scaffold0063; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 50303 - 50438
Alignment:
| Q |
1 |
atgatattttcatctttcatgattgtccaatattcattcatgctaact---------attcattataaattttcactcggctactcggtacgttgccaac |
91 |
Q |
| |
|
||||||| ||||| |||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
50303 |
atgatatgttcatttttcgtgactgtccaatattcattcatgctaacttatgccatcattcactataaattttcactcaactactcggtaccttgccaac |
50402 |
T |
|
| Q |
92 |
caacacttccatgtccttgtatgaaaatgcattttc |
127 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
50403 |
caacacctccatgtgcttgtatgaaaatgtattttc |
50438 |
T |
|
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Target: scaffold0063; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 50829 - 50953
Alignment:
| Q |
163 |
ctgagatcatcatcaagtattgactcaaacatacagcttgcactgttggagaaagatgctactattatcct-taattattgttattaattattgatatta |
261 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||| ||||||| || | | ||| || ||||||| ||| |||| |||||| ||| |
|
|
| T |
50829 |
ctgagatcatcatcaagcattaactcaaacatacggcttgcactattggagattgagattgattttacactccaattattattagtaatgattgatttta |
50928 |
T |
|
| Q |
262 |
cgtagagattgagatcctatccatc |
286 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50929 |
cgtagagattgagatcctatccatc |
50953 |
T |
|
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Target: scaffold0063; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 36546 - 36597
Alignment:
| Q |
271 |
tgagatcctatccatcaactttattatcactgataaactcctttactttagt |
322 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
36546 |
tgagatccaatccctcaacttcattatcactaataaactcctttactttagt |
36597 |
T |
|
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 2081632 - 2081578
Alignment:
| Q |
329 |
ttttgataaagctaaaaa-ttcaataaatgttgtcaggtgcagcctgaacctcat |
382 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2081632 |
ttttgataaagctaaaaaattcaataaatgttttcaggtgcagcctgaacctcat |
2081578 |
T |
|
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