View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_10 (Length: 386)
Name: NF8505_low_10
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 40758473 - 40758825
Alignment:
| Q |
1 |
ctatagcagaaaaagcgcagcaacatcctcaagcacaagactgcagcagccaaattctacaccagaagcaaaaaagcagctgccgattaagttaacgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40758473 |
ctatagcagaaaaagcgcagcaacatcctcaagcacaagactgcagcagccaaattctacaccagaagcaaaaaagcagctgccga------------ag |
40758560 |
T |
|
| Q |
101 |
cttctgttaacattatgataagaaagtaacgcagaaacccgatgaaaaaagccaaaacagacagcaaaagagacataatcacagctgatctgaacagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40758561 |
cttctgttaacattatgataagaaagtaacgcagaaacccgatgaaaaaagccaaaacagacagcaaaagagacataatcacagctgatctgaacagagg |
40758660 |
T |
|
| Q |
201 |
ctaaaacatccaaaagcacaacaaagcgaggcacaccatagagcattaaatgattatcctttccaaacaactccaagagtcccaagaccattcataatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40758661 |
ctaaaacatccaaaagcacaacaaagcgaggcacaccatagagcattaaatgattatcctttccaaacaactccaagagtcccaagaccattcataatac |
40758760 |
T |
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| Q |
301 |
atacgcaaattcgattccactactcttccaagataccaaggccaagccaacaccttagttctatctat |
368 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40758761 |
atacgcaaattcgattcc---actcttccaagataccaaggccaagccaacaccttagttctatctat |
40758825 |
T |
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