View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_12 (Length: 381)
Name: NF8505_low_12
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 3958672 - 3959022
Alignment:
| Q |
21 |
gtggtcttgctttcaagatttcttcttgctcttcctacaagataaagaaaaagaatgcttgactaccatttttatgtccagtactaacttagataatatg |
120 |
Q |
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| T |
3958672 |
gtggtcttgctttcaagatttcttcttgctcttcctacaagataaagaaaaagaatatttgactaccatttttatgtccagtactaacttagataatatg |
3958771 |
T |
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| Q |
121 |
atcgtaaataaaaccattactagtgaatagtgatctatttgaaagtaacaaattctaggtaatttaccttggctttcttcaaacaaagtggatgctctgt |
220 |
Q |
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| T |
3958772 |
atcgtaaataaaaccattac----gaatagtgatctatttgaaagtaaaaaattctaggtaatttaccttggctttcttcaaacaaagtggatgctctgt |
3958867 |
T |
|
| Q |
221 |
aagatacataattgtcaacatcataccagctgcaattgaatcgtgaccaccaaatagaagtgctatcagtaagtcaataatgtctttatcctccaatttt |
320 |
Q |
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| T |
3958868 |
aagatacataattgtcaacatcataccagctgcaattgaatcgtgaccaccaaatagaagtgttatcagtaagtcaataatgtctttgtcctccaatttt |
3958967 |
T |
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| Q |
321 |
tcacctgcttcgtcattcatttccaaaagaatgtttatcaaatctttcttctcac |
375 |
Q |
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| T |
3958968 |
tcacctgcttcgtcattcatttccaaaagaatgtttatcaaatctttcttttcac |
3959022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 129804 - 129982
Alignment:
| Q |
185 |
taccttggctttcttcaaacaaagtggatgctctgtaagatacataattgtcaacatcataccagctgcaattgaatcgtgaccaccaaatagaagtgct |
284 |
Q |
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| T |
129804 |
taccttggctttcttcaaacaaagtggattttgtgcaagatacataactgaccacatagaagcagttgcaattgaatcatgagcaccaaatagaaaggct |
129903 |
T |
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| Q |
285 |
atcagtaagtcaataatgtctttatcctccaatttttcacctgcttcgtcattcatttccaaaagaatgtttatcaaat |
363 |
Q |
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| T |
129904 |
atcagtaagtcaataatgtccttatcctccaatttttcacccctttcgtctttggtttccaaaataatgtctaacaaat |
129982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 156 - 364
Target Start/End: Complemental strand, 10306356 - 10306148
Alignment:
| Q |
156 |
tatttgaaagtaacaaattctaggtaatttaccttggctttcttcaaacaaagtggatgctctgtaagatacataattgtcaacatcataccagctgcaa |
255 |
Q |
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| T |
10306356 |
tatttaaaagtaacaaattatagtgaatttaccttggctttcttcaaacaaagtggattttgtgtaagatttataactgaccacataacagcagttgcaa |
10306257 |
T |
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| Q |
256 |
ttgaatcgtgaccaccaaatagaagtgctatcagtaagtcaataatgtctttatcctccaatttttcacctgcttcgtcattcatttccaaaagaatgtt |
355 |
Q |
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| T |
10306256 |
ttgcatcatgagcaccaaataggaacgctacgagtaaatcaacaatatccttatcttcaaatttttcacccctttcgtcattgatttccaaaagattgtc |
10306157 |
T |
|
| Q |
356 |
tatcaaatc |
364 |
Q |
| |
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| T |
10306156 |
taacaaatc |
10306148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 364
Target Start/End: Original strand, 149622 - 149809
Alignment:
| Q |
177 |
aggtaatttaccttggctttcttcaaacaaagtggatgctctgtaagatacataattgtcaacatcataccagctgcaattgaatcgtgaccaccaaata |
276 |
Q |
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|||| ||||||||| |||||||||||||||||||||| | |||||||||||||| || | |||| || || ||| |||| || ||| ||||||||| |
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| T |
149622 |
aggtgatttaccttagctttcttcaaacaaagtggattttgtgtaagatacataactgaccacataatggtagttgcgattgtttcatgagcaccaaata |
149721 |
T |
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| Q |
277 |
gaagtgctatcagtaagtcaataatgtctttatcctccaatttttcacctgcttcgtcattcatttccaaaagaatgtttatcaaatc |
364 |
Q |
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| T |
149722 |
gaaacgttatcagtaagtcaataatgtccttatcctcaaatttttcaccactttcgtctttgatttgcaaaataatgtctaacaaatc |
149809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 147199 - 147267
Alignment:
| Q |
21 |
gtggtcttgctttcaagatttcttcttgctcttcctacaagataaagaaaaagaatgcttgactaccat |
89 |
Q |
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| T |
147199 |
gtggtcttgctttcatgatctcttcttgctcttcctacaagataaagacaaagaatgattgattaccat |
147267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 127078 - 127130
Alignment:
| Q |
25 |
tcttgctttcaagatttcttcttgctcttcctacaagataaagaaaaagaatg |
77 |
Q |
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| T |
127078 |
tcttgctttcaaaattccttcttgctcttcctacaaaataaagataaagaatg |
127130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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