View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_14 (Length: 372)
Name: NF8505_low_14
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 45548250 - 45548586
Alignment:
| Q |
20 |
gactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggctcttcttttcctttatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548250 |
gactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggctcttcttttcctttatt |
45548349 |
T |
|
| Q |
120 |
caaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccctttgtccccattt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548350 |
caaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccctttgtccccattt |
45548449 |
T |
|
| Q |
220 |
tttgtttcagttccgtcattagttccatatactttggatttcactgcacttcctacctctgcaacctttccataaactggagctaatttctcagtaagag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45548450 |
tttgtttcagttccgtcattagttccatatactttggatttcactgcacttcctacctctgcaacctttccataaactggagctaatttctcagtaagag |
45548549 |
T |
|
| Q |
320 |
aataaccaacgttatttccattctcacttttttgatg |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45548550 |
aataaccaacgttatttccattctcacttttttgatg |
45548586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 45542929 - 45543148
Alignment:
| Q |
21 |
actattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggctcttcttttcctttattc |
120 |
Q |
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||||||| ||||||||||||||| ||||| || ||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
45542929 |
actattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttcttttttcaatggctcttctttccctttatgt |
45543028 |
T |
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| Q |
121 |
aaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccctttgtccccatttt |
220 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| |||||||||| ||||||| |
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| T |
45543029 |
aaagcttctgaaaccacctcagaaagtgccttatcttcttcactaggccttagcttctcagccagatagtccttcacagaagcccctttgtctccatttt |
45543128 |
T |
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| Q |
221 |
ttgtttcagttccgtcatta |
240 |
Q |
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||||||||||||| |||||| |
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| T |
45543129 |
ttgtttcagttccctcatta |
45543148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 45530037 - 45530257
Alignment:
| Q |
20 |
gactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggctcttcttttcctttatt |
119 |
Q |
| |
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||||| ||||||||||||||||||| ||||| | ||||||||| |||||||| |||| |||||||||||||| |||||||||| ||||| |||| || |
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| T |
45530037 |
gactagtcacattgctctcttcaaaaactttctttgacttctcatcctcactagccaatattccatcctcttttgtcaatggctcgtctttcccttcatg |
45530136 |
T |
|
| Q |
120 |
caaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccctttgtccccattt |
219 |
Q |
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|||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| || || |||||||| ||||||| || | |||| |
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| T |
45530137 |
taaagcttctaaaatcacctaagaaagtgccttatcttcttcactaggccttagcttctcagccaaatagtctttcacagtagcccctttatctcgattt |
45530236 |
T |
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| Q |
220 |
tttgtttcagttccgtcatta |
240 |
Q |
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|||||||||||||| |||||| |
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| T |
45530237 |
tttgtttcagttccctcatta |
45530257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 7005953 - 7005774
Alignment:
| Q |
27 |
cacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcctcttttttcaatggctcttcttttcctttattcaaagtt |
126 |
Q |
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||||| |||||||||| ||||||| || ||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||| ||||||| |||| | |
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| T |
7005953 |
cacatagctctcttcacacactttctctgacttctcattctcactacccaattttccatcctcttttttcaaaggctcttctttccctttatgaaaagct |
7005854 |
T |
|
| Q |
127 |
tctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctcggccaagtaatccttcacagtgacccc |
206 |
Q |
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||||||||||||| ||| ||||| || ||||||||||||||| |||| | ||| ||||| | ||||||||||| ||||| |
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| T |
7005853 |
tctgaaatcaccttagagagtgcattgtcttcttcactaggccttagttactcagccaaacagtccttcacagtaacccc |
7005774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 36610400 - 36610320
Alignment:
| Q |
238 |
ttagttccatatactttggatttcactgcacttcctacctctgcaacct--ttccataaactggagctaatttctcagtaa |
316 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||| |
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| T |
36610400 |
ttagttctatacactttggatttcactgcacttcctacctttgcaaccttgtgtaataaactggagctaatttctaagtaa |
36610320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 36623592 - 36623543
Alignment:
| Q |
291 |
ataaactggagctaatttctcagtaagagaataaccaacgttatttccat |
340 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| ||| ||||||| |
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| T |
36623592 |
ataaactggagctaatttctcagtaagagagtaagcaaagttctttccat |
36623543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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