View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_15 (Length: 360)
Name: NF8505_low_15
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 11165309 - 11164988
Alignment:
| Q |
18 |
catcaggctgtgtgtgactggaaaaatgaccagacggtctgtgtgtatgaagaccagatggtggttcgcatagagagaaaaggaggtgcagatagtgaat |
117 |
Q |
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| T |
11165309 |
catcaggctgtgtgtgactggaaaaatgaccagacggtctttgggtatgaagaccagatggtggttcgcatagagagaaaagggggtgcagatagtgaat |
11165210 |
T |
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| Q |
118 |
cattaaaacttgcatattaaaaagcccaaaactaggaatatcatcatcatactccaaaaaatattcataatccaccctaaatatcaccaaatacttctgt |
217 |
Q |
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| T |
11165209 |
cattaaaacttgcatattaaaaagcccaaaactaggaatatcatcat---actccaaaaaatattcataatccaccctaaatatcaccaaatacttctgt |
11165113 |
T |
|
| Q |
218 |
aaatcggtcaaacaatgacaataatacttctttaaattagaatatcttactaaaagatactcgtaatccaccctaaatatcaccagaattagaacaacac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11165112 |
aaatcggtcaaacaatgacaataatacttctttaaattagaatatcttactaaaagatactcataatccaccctaaatatcaccagaattagaacaacac |
11165013 |
T |
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| Q |
318 |
aacaataagaacaacaatacttgtc |
342 |
Q |
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|||| |||||||||||||||||||| |
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| T |
11165012 |
aacagtaagaacaacaatacttgtc |
11164988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 11158034 - 11157905
Alignment:
| Q |
207 |
aatacttctgtaaatcggtcaaacaatgacaataatacttctttaaattagaat---atcttactaaaagatactcgtaatccaccctaaatatcaccag |
303 |
Q |
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||||||| | |||||| |||||| ||| ||||||||||||||||||||||| || ||| ||| ||| ||| || ||||||| |||||||| ||||| |
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| T |
11158034 |
aatacttttttaaatcagtcaaataataacaataatacttctttaaattagcatatcatcatacccaaaaatattcataatccaacctaaataccaccaa |
11157935 |
T |
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| Q |
304 |
aattagaacaac-acaacaataagaacaac |
332 |
Q |
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||||| |||||| ||||||||||||||||| |
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| T |
11157934 |
aattaaaacaacaacaacaataagaacaac |
11157905 |
T |
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