View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_17 (Length: 335)
Name: NF8505_low_17
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 4266734 - 4266411
Alignment:
| Q |
1 |
ctagggaaatggatgaaaaatccgttgaggtcattgagggatttgcgttgtgaccgattgatcaccctttattttcattacatagtgattattaaggagt |
100 |
Q |
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| T |
4266734 |
ctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatcaccctttattttcattacatagtgattgttaaggagt |
4266635 |
T |
|
| Q |
101 |
aatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagttatgacaaaaactaacatattatcgtttattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4266634 |
aatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagttatgacaaaaactaacatattatcgtttattat |
4266535 |
T |
|
| Q |
201 |
taaaaagaaagaaagagcaatgcatgtttgtgcttgcggtgtagagcgtacattgcttgcaccttcatattagtccaatctaccaataattttacatgag |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4266534 |
taaaaagaaagaaagagcaatgcatgtttgtgcctgcggtgtagagcgtacattgcttgcaccttcatattagtccaatctaccaataatcttacatgag |
4266435 |
T |
|
| Q |
301 |
tataatctattacctatgatgatg |
324 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
4266434 |
tataatctattacctataatgatg |
4266411 |
T |
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