View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_20 (Length: 310)
Name: NF8505_low_20
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29282891 - 29283186
Alignment:
| Q |
1 |
aagaaagaagagagtggtgctactgctatggttaatattgatgaagaaggaatgaagagaatgatgtattattatcaatatcctccactttatgtgattg |
100 |
Q |
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| T |
29282891 |
aagaaagaagagagtggtgctactgctatggttaatattgatgaagaaggaatgaagagaatgatgtattattatcaatatcctccactttatgtgattg |
29282990 |
T |
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| Q |
101 |
aacgtactccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttcataaag----tcatcatatgaataatagagagaacaatatga |
196 |
Q |
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| T |
29282991 |
aacgtactccaccacctcaactattcagtgatgaaaatcctaatgcatgcatcatttcataaagtccatcatcatatgaataatagagagaacaatatga |
29283090 |
T |
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| Q |
197 |
taannnnnnngagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcatcatatgatgataatgagttgattaatgatatatc |
292 |
Q |
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| T |
29283091 |
aatttttttggagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcatcatgtgatgataatgagttgattaatgatatatc |
29283186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 59 - 292
Target Start/End: Complemental strand, 6469938 - 6469707
Alignment:
| Q |
59 |
gaatgatgtattattatcaatatcctccactttatgtgattgaacgtactccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttc |
158 |
Q |
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| T |
6469938 |
gaatgatgtattattatcaatatcctccactttatgtgattgaacgtactccacctcctcaactattcagtgatgaaaatcctaatgcatgcagcatttc |
6469839 |
T |
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| Q |
159 |
ataaagtcatcatatgaataatagagagaacaatatgataannnnnnngagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcat |
258 |
Q |
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| T |
6469838 |
ataaagtcatcatatgaataacagagagaacaatatgata--ttttttgtgttttgttgatggaatatgtagaggagaaaatgtgcctaaatggaatcat |
6469741 |
T |
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| Q |
259 |
catatgatgataatgagttgattaatgatatatc |
292 |
Q |
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| T |
6469740 |
cacatgatgataataagttgatcaatgatatatc |
6469707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 42524711 - 42524657
Alignment:
| Q |
109 |
ccaccacctcaactattcagtgatgaaaaccctaatgcatgcagcatttcataaa |
163 |
Q |
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| T |
42524711 |
ccaccacctcaactctttagtgatgaaaatcccaatgcatgttgcatttcataaa |
42524657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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