View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8505_low_21 (Length: 309)
Name: NF8505_low_21
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 28604953 - 28604665
Alignment:
| Q |
5 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28604953 |
ttatactcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
28604854 |
T |
|
| Q |
105 |
gatctcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatccctatgcataaatacatgacattaataatgaaagaagaaatt |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28604853 |
gatctcttctgcttttgggcagctcttggagtagtagtttacctgtagttggcttatccctatgcataaatacatgacattaataatgaaagaagaaatg |
28604754 |
T |
|
| Q |
205 |
gtacaatatctacaaaaatacaattaaagaaatagataacgtgtccataacagattaggattttatgcattcacataaactttatattg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28604753 |
gtacaatatctacaaaaatacaattaaagaaatagataacgtgtccataacagattaggattttatgcattcacataaactttatattg |
28604665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 28663021 - 28662860
Alignment:
| Q |
5 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
104 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||| ||||||||| |
|
|
| T |
28663021 |
ttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgat |
28662922 |
T |
|
| Q |
105 |
gatctcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatcccta |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| |||||| |
|
|
| T |
28662921 |
gatctcttctgcttttgggcagctcttggagtagtagttcaattgtagctggcttttcccta |
28662860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 28635331 - 28635193
Alignment:
| Q |
5 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
104 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||| | |||| |||||||||| ||||| |
|
|
| T |
28635331 |
ttatactcacgttgactgtgcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgat |
28635232 |
T |
|
| Q |
105 |
gatctcttctgcttttgggcagctcatggagtagtagtt |
143 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28635231 |
tatctcttctgcttttgggcagctgttggagtagtagtt |
28635193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 28654620 - 28654458
Alignment:
| Q |
9 |
actcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgatgatc |
108 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||| || ||||||||| |||||| |||| || || ||| | |||| ||||||| |||||||| ||| |
|
|
| T |
28654620 |
actcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttgatt---atatagttcagtgacttgctgcttgattatc |
28654524 |
T |
|
| Q |
109 |
tcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatccctatgcataaa |
174 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||| | ||| || |||||| ||||| | |||||| |
|
|
| T |
28654523 |
tcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaa |
28654458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University