View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_22 (Length: 306)
Name: NF8505_low_22
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 4356390 - 4356097
Alignment:
| Q |
11 |
atcatcactaattagatagaacttctcaaaagcactaacaat--ctattaattaaacttgggcgcacatagcagtagtattggttggactacgtacatca |
108 |
Q |
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| T |
4356390 |
atcataactgattagataaaacttctcaaaagcactaacaatatctactaattaaacttggccgcacatagcagtagtattggttggactac----atca |
4356295 |
T |
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| Q |
109 |
aattccatgctgaaacatcagttccaagtcacagcatttatcccacaagaacgaaatgtgtctgagtaagagatcaaacgaagattgaatcgacaattgt |
208 |
Q |
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| T |
4356294 |
aattccatgctgaaacatcagttccaagtcacagcatttatcccacaagaacgaaatgtgtctgagtaggagatcaaacgaagattgaatcgacaattgt |
4356195 |
T |
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| Q |
209 |
gttgccctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgta |
306 |
Q |
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| T |
4356194 |
gttgccctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgta |
4356097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 4674522 - 4674815
Alignment:
| Q |
11 |
atcatcactaattagatagaacttctcaaaagcactaacaat--ctattaattaaacttgggcgcacatagcagtagtattggttggactacgtacatca |
108 |
Q |
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| T |
4674522 |
atcataactgattagataaaacttctcaaaagcactaacaatatctactaattaaacttggccgcacatagcagtagtattggttggactac----atca |
4674617 |
T |
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| Q |
109 |
aattccatgctgaaacatcagttccaagtcacagcatttatcccacaagaacgaaatgtgtctgagtaagagatcaaacgaagattgaatcgacaattgt |
208 |
Q |
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| T |
4674618 |
aattccatgctgaaacatcagttccaagtcacagcatttatcccacaagaacgaaatgtgtctgagtaggagaacaaacgaagattgaatcgacaattgt |
4674717 |
T |
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| Q |
209 |
gttgccctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgta |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4674718 |
gttgccctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgta |
4674815 |
T |
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