View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8505_low_23 (Length: 302)

Name: NF8505_low_23
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8505_low_23
NF8505_low_23
[»] chr4 (10 HSPs)
chr4 (17-290)||(2390832-2391105)
chr4 (21-244)||(2381244-2381473)
chr4 (23-197)||(2380042-2380216)
chr4 (58-115)||(2367678-2367735)
chr4 (61-189)||(2376161-2376289)
chr4 (61-104)||(1547469-1547512)
chr4 (58-101)||(2373256-2373299)
chr4 (50-125)||(2460589-2460664)
chr4 (57-104)||(12126879-12126926)
chr4 (61-106)||(6007668-6007713)
[»] chr1 (3 HSPs)
chr1 (24-125)||(15837955-15838056)
chr1 (75-122)||(9581951-9581998)
chr1 (76-122)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (61-105)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (61-106)||(32152209-32152254)
chr8 (60-125)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (61-116)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (61-107)||(32268773-32268819)
chr5 (61-106)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 2391105 - 2390832
Alignment:
Q  17 agatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2391105 agatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttcgagacgatagaaagaga 2391006  T
Q  117 cttgaaagtatagtgatctccatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacacccttctgctgtttccgctgccatcgtt 216  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  2391005 cttgaaagtatagtggtcttcatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacactcttttgctgtttccgctgccatcgtt 2390906  T
Q  217 tttggaaccttggatttggatgatgatgctgtcgccaatgtttttgaaactctttcctctcaattctcgttcat 290  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  2390905 tttggaaccttggatttggatgatgatgctgtcgctattgtttttgaaactcttttctctcaattctcgttcat 2390832  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 2381473 - 2381244
Alignment:
Q  21 ttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttg 120  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||    
T  2381473 ttgaggaatgaaagggatggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttg 2381374  T
Q  121 aaagtatagtgatctccatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacacccttctgctgt------ttccgctgccatcg 214  Q
    |||||  |||| |||||||  ||||||||||||||||||||||| |  |||||||||||| |||||||| ||| ||||||      | ||||||||||      
T  2381373 aaagtgcagtggtctccattgaggaatttgatgatgtattcccataggtcatctggtaaacttgaacacgcttttgctgttgctgctgccgctgccattc 2381274  T
Q  215 tttttggaaccttggatttggatgatgatg 244  Q
    ||||||||||||||||||||||||||||||    
T  2381273 tttttggaaccttggatttggatgatgatg 2381244  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 2380216 - 2380042
Alignment:
Q  23 gaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 122  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| | ||| |||||| |||||||| |||||||||||||| |||||||||||||     
T  2380216 gaggaataaaagggatggtttgttgggtgattttgagggtgaatcggaaactgtaggtgatcgagagtaactgtttggagacgatggaaagagacttgac 2380117  T
Q  123 agtatagtgatctccatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacacccttctgc 197  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  2380116 agtacagtggtctccatcaaggaatttgatgatgtattcccataactcatctggtaaatttgaacatgcttctgc 2380042  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 2367735 - 2367678
Alignment:
Q  58 atggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagag 115  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  2367735 atggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 2376289 - 2376161
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgtatt 160  Q
    |||||||||| |  ||||||||||||||| ||   |||||||||||| || |||||||| ||||    ||  || ||  | |||||||||||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgatgtatt 2376190  T
Q  161 cccacaactcatctggtaaatttgaacac 189  Q
    |||| ||||||| |||||||| |||||||    
T  2376189 cccataactcatatggtaaatatgaacac 2376161  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 1547512 - 1547469
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagac 104  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 2373299 - 2373256
Alignment:
Q  58 atggagaatcggagattgttggtgatggagagtaattgtttgga 101  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  2373299 atggagaatcggagatgattggtgatggagagaaattgtttgga 2373256  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 2460589 - 2460664
Alignment:
Q  50 tgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 125  Q
    |||||||||  ||||||||||||   |||||||||||||| || ||||||||||| || || ||||| ||||||||    
T  2460589 tgattttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagt 2460664  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 12126879 - 12126926
Alignment:
Q  57 gatggagaatcggagattgttggtgatggagagtaattgtttggagac 104  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12126879 gatggagaataggagacggttggtgatggagagaaattgtttggagac 12126926  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 6007668 - 6007713
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacga 106  Q
    |||||||||||| |||||||||||||||| || ||||| |||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacga 6007713  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 15838056 - 15837955
Alignment:
Q  24 aggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaa 123  Q
    ||||||||||||||| ||||| |   ||||||||| |||||||||||||  ||||||||||||||| || ||||||||||| || || || |||||||||    
T  15838056 aggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttggagaccatcgagagggacttgaaa 15837957  T
Q  124 gt 125  Q
    ||    
T  15837956 gt 15837955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 9581951 - 9581998
Alignment:
Q  75 gttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 122  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||||||    
T  9581951 gttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 9587510 - 9587556
Alignment:
Q  76 ttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 122  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||    
T  9587510 ttggtgacggagagaaactgtttggagacgacagaaagagacttgaa 9587556  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacg 105  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacga 106  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 39516859 - 39516924
Alignment:
Q  60 ggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 125  Q
    |||||||| ||||  ||||||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagt 39516924  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 10578857 - 10578802
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 116  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  10578857 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 10578802  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 32268773 - 32268819
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacgat 107  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgat 32268819  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  61 gagaatcggagattgttggtgatggagagtaattgtttggagacga 106  Q
    |||||||| ||| |||||||||||||||| || |||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

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