View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8505_low_24 (Length: 290)
Name: NF8505_low_24
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 36946175 - 36945897
Alignment:
| Q |
1 |
caccttgaggccccaccttcataagcccgaaatatgcatctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccgcagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36946175 |
caccttgaggccccaccttcataagcccgaaatatgcatctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccacagat |
36946076 |
T |
|
| Q |
101 |
gtcctcagtttcaacataactaagtggtgttgcagatgcctctagattgcatagttctgacctgtgttcagaaataaagctcgagaaatattatcacacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36946075 |
gtcctcagtttcaacataactaagtggtgttgcagatgcctttagattgcatagttctgacctgtgttcagaaataaagctcgagaaatattatcacacg |
36945976 |
T |
|
| Q |
201 |
attgcaaagttacatagctacaagttatctatcgatcttaagaaaaatcttccctatctattcatattaagaataatct |
279 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
36945975 |
attgcaaagttacatagctacaaattatctatcgatcttaagaaaaatcttccttatctattcatcttaagaaaaatct |
36945897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 17768872 - 17768993
Alignment:
| Q |
9 |
ggccccaccttcataagcccgaaatatgcatctgctatgtataaatcaccagttttcttgtcaaatctgagtcccaaaggccttccgcagatgtcctcag |
108 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
17768872 |
ggccccaccttcaacagcccaagatatgcatctgcaatgtacaattcacctgttttcttgtcgaatctgagtcccaaaggccttccacatatgtgctcag |
17768971 |
T |
|
| Q |
109 |
tttcaacataactaagtggtgt |
130 |
Q |
| |
|
| | |||||||||| |||||| |
|
|
| T |
17768972 |
tcttcacataactaaatggtgt |
17768993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University