View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_26 (Length: 278)
Name: NF8505_low_26
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 31241592 - 31241341
Alignment:
| Q |
18 |
agaagtcattacaacgtgagcttgagatttgtgtggatgctgaaacaaatgtgaatccgtatgtcatttatccttannnnnnncattgcttatttatttt |
117 |
Q |
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| T |
31241592 |
agaagtcattacaacgtgagcttgagatttgtgtggatgctgaaacaaatgtgaacccatatgtcatttatccttatttttttcattgcttatttatttt |
31241493 |
T |
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| Q |
118 |
ccttaataatgttttattctatcaacaattctggtcaccctagctttcaacaagactatcaaggtcctctcgaagattagaaataaatttcttaactaga |
217 |
Q |
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| T |
31241492 |
ccttaataatattttattctatcaacaattctggtcaccctagctttcaacaggactatcaaggtcctctcgaagattagaaataaatttcttaactaga |
31241393 |
T |
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| Q |
218 |
taaatttgattaagaacatgcacctacttgtaacccatcttattagaattat |
269 |
Q |
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| T |
31241392 |
taagtttgattaagaacatgcacctacttgtaacccatcttattagaattat |
31241341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 39689347 - 39689449
Alignment:
| Q |
149 |
tggtcaccctagctttcaacaagactatcaaggtcctctcgaagattagaaataaatttcttaactagataaatttgattaagaacatgcacctacttgt |
248 |
Q |
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||||||| ||||||||||||||| ||| | ||||| |||| ||||||| || | || ||||||| |||||||| ||||||||||||| ||| |||| |
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| T |
39689347 |
tggtcacgctagctttcaacaaggctaccctggtcccctcgcagattaggaacagatggcttaactgtttaaatttgtttaagaacatgcatctaattgt |
39689446 |
T |
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| Q |
249 |
aac |
251 |
Q |
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| T |
39689447 |
aac |
39689449 |
T |
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