View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8505_low_27 (Length: 263)
Name: NF8505_low_27
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 28817030 - 28817269
Alignment:
| Q |
14 |
gaaacacttcctctatggcattcattttggaagccttgtatacaagtccactagctggataaatatctttttgtgtcagttgaagactatagaaagcaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28817030 |
gaaacacttcctctatggcattcattttggaagccttgtatacaagtccactagttggataaatatctttttgtgtcagttgaagactatagaaagcaat |
28817129 |
T |
|
| Q |
114 |
gtccaataaaaaccatgtactagttgttcctagaagatgaaggccatgcctattaagaaactctgaagataagagtccataagagtgtgactcgagtggc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28817130 |
gtccaataaaaaccatgtactagttgttcctagaagatgaaggccatgcctattaagaaactctgaagagaagagtccataagagtgtgactcgagtggc |
28817229 |
T |
|
| Q |
214 |
ctgatagcaatcctggtattagattcttctgaaagtatgt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28817230 |
ctgatagcaatcctggtattagattcttctgaaagtatgt |
28817269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 16184724 - 16184687
Alignment:
| Q |
98 |
gactatagaaagcaatgtccaataaaaaccatgtacta |
135 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16184724 |
gactatagaaagcaatatccaacaaaaaccatgtacta |
16184687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 16224114 - 16224077
Alignment:
| Q |
98 |
gactatagaaagcaatgtccaataaaaaccatgtacta |
135 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16224114 |
gactatagaaagcaatatccaacaaaaaccatgtacta |
16224077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University