View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_3 (Length: 611)
Name: NF8505_low_3
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 559982 - 559428
Alignment:
| Q |
18 |
attactatgttgaaattccaatggcggctgcgtttcaatcctcgcttatataaaacattttagtcacttgatttctggctcggatacacnnnnnnnn-ga |
116 |
Q |
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| T |
559982 |
attactatgttgaaattccaatggcggctgcgttttaatcctcgcttatataaaacattttagtcacttgatttccggctcgaatacactatttttttga |
559883 |
T |
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| Q |
117 |
attatttacaatgaccataatgaga-tgatacttcccactacatcagctataatctcttcctaatgtagtgagatgtatcattatcacgataatcgtcaa |
215 |
Q |
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| T |
559882 |
attatttacaacgaccataatgggaatgacacttcccactacatcagctataatctcttcctaatgtagtgagatgtatcattgtcacgataatcgtcta |
559783 |
T |
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| Q |
216 |
agaaagaatgcattaaagtcaactcaaccaactgcaatttttcataattgtgag----------tgccactagactctcaccctattaatatcctaaatt |
305 |
Q |
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| T |
559782 |
agaaagagtgcattaaagtcaactcaaccaactataatttttcataattgcgaggaaaaccaactgccactagactctcaccctattaatatcctaaatt |
559683 |
T |
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| Q |
306 |
tcccttaaccacacaagaaggtcttcaatattgttctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatg |
405 |
Q |
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| T |
559682 |
tcccttaaccacacaagaaggtcttcaatattgttctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatg |
559583 |
T |
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| Q |
406 |
tgtcttcactctatgtttgacaacttattcgagagaaaaggaaaagatttaagattatctcaattgtgtatatgaaaaatatgatgttgatttcaagaga |
505 |
Q |
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| T |
559582 |
tgtcttcactctatgtttgacaacttattcaagagaaaaagaaaagatttaagattatctcaattgtgtatatgaaaaatatgatgttgatttcaagaga |
559483 |
T |
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| Q |
506 |
gaaaaatttgaatcaatgttgtgtgaattcttttttatcttctttttctgatgtg |
560 |
Q |
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| T |
559482 |
gaaaaatttgaatcaatgttgtgtgaattcttttttatcttctttttctgatgtg |
559428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 327 - 560
Target Start/End: Complemental strand, 557974 - 557743
Alignment:
| Q |
327 |
tcttcaatattgttctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgac |
426 |
Q |
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| T |
557974 |
tcttcaatgttgttctcattattgtttctgctagtgttgttacaaagaacatatcgaaccaaagttatagcatct--tgtatctccactttatgtttgac |
557877 |
T |
|
| Q |
427 |
aacttattcgagagaaaaggaaaagatttaagattatctcaattgtgtatatgaaaaatatgatg-ttgatttcaagagag--aaaaatttgaatca--a |
521 |
Q |
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| T |
557876 |
aaattattcgagagaaaa----aagatttaagattgtctcaattgtgtatatgaaaaatattatgctagatttcaagagagataaaaatttgaatcaata |
557781 |
T |
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| Q |
522 |
tgttgtgtgaattcttttttatcttctttttctgatgtg |
560 |
Q |
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| T |
557780 |
tgttgtgttaacttctttttatcctc-ttttctgatgtg |
557743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 62 - 265
Target Start/End: Complemental strand, 558249 - 558047
Alignment:
| Q |
62 |
cttatataaaacattttagtcacttgatttctggctcggatacacnnnnnnnngaattatttacaatgaccataatgag-atgatacttcccactacatc |
160 |
Q |
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| T |
558249 |
cttatataaaacattttagtcacttgatttcggtctcggatgcactatttcttgga--atttacaacaacaatcatgggcatgacacttccaactacaac |
558152 |
T |
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| Q |
161 |
agctataatctcttcctaatgtagtgagatgtatcattatcacgataatcgtcaaagaaagaatgcattaaagtcaactcaaccaactgcaatttttcat |
260 |
Q |
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| T |
558151 |
ggcaataatctcttcctaatacagtgagatgtattattgccacgataatcgtccaagaaagagtgcattaaagttaactcaaccaactataatatttcat |
558052 |
T |
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| Q |
261 |
aattg |
265 |
Q |
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| T |
558051 |
aattg |
558047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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