View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8505_low_30 (Length: 246)

Name: NF8505_low_30
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8505_low_30
NF8505_low_30
[»] chr4 (4 HSPs)
chr4 (9-234)||(33735636-33735861)
chr4 (46-234)||(33720982-33721170)
chr4 (25-234)||(33718963-33719172)
chr4 (46-234)||(33750436-33750624)
[»] chr3 (1 HSPs)
chr3 (185-234)||(45013999-45014048)
[»] chr7 (2 HSPs)
chr7 (182-234)||(6568891-6568943)
chr7 (182-234)||(6583050-6583102)
[»] chr1 (2 HSPs)
chr1 (187-219)||(50102277-50102309)
chr1 (187-220)||(47424881-47424914)
[»] chr8 (1 HSPs)
chr8 (185-220)||(8584915-8584950)
[»] chr5 (1 HSPs)
chr5 (191-231)||(2361316-2361356)
[»] chr2 (1 HSPs)
chr2 (116-216)||(45437332-45437432)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 33735861 - 33735636
Alignment:
Q  9 cctccaaagggacagccacttctggatccaccactttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagc 108  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735861 cctccaaagggacaaccacttctggatccaccacgttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagc 33735762  T
Q  109 agcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735761 agcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccatttt 33735662  T
Q  209 ccccatggcctctgcctcactcctct 234  Q
    ||||||||||||||||||||||||||    
T  33735661 ccccatggcctctgcctcactcctct 33735636  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 33721170 - 33720982
Alignment:
Q  46 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 145  Q
    |||||| ||||||||||| | ||||||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  33721170 cttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtg 33721071  T
Q  146 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 234  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33721070 gtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctct 33720982  T

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Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 33719172 - 33718963
Alignment:
Q  25 cacttctggatccaccactttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagct 124  Q
    ||||||||| ||| | || | |||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||    
T  33719172 cacttctggttcctcaacatgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagct 33719073  T
Q  125 ctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcc 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  33719072 ctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtc 33718973  T
Q  225 tcactcctct 234  Q
    ||||||||||    
T  33718972 tcactcctct 33718963  T

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Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 33750624 - 33750436
Alignment:
Q  46 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 145  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33750624 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 33750525  T
Q  146 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 234  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || |||||||||||    
T  33750524 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 33750436  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 45013999 - 45014048
Alignment:
Q  185 tcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 234  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  45013999 tcacgaatctctgcagcccactttccccatggcctctgcctcacacctct 45014048  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  182 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 234  Q
    |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  182 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 234  Q
    |||||||| || ||||| ||||||||||||||||| || || |||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 50102277 - 50102309
Alignment:
Q  187 acgaatctcagcagcccattttccccatggcct 219  Q
    |||||||||||||||||||||||||||||||||    
T  50102277 acgaatctcagcagcccattttccccatggcct 50102309  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 47424914 - 47424881
Alignment:
Q  187 acgaatctcagcagcccattttccccatggcctc 220  Q
    ||||||||||||||||||| ||||||||||||||    
T  47424914 acgaatctcagcagcccatcttccccatggcctc 47424881  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 8584950 - 8584915
Alignment:
Q  185 tcacgaatctcagcagcccattttccccatggcctc 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8584950 tcacgaatctcagcagcccatttgccccatggcctc 8584915  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 2361316 - 2361356
Alignment:
Q  191 atctcagcagcccattttccccatggcctctgcctcactcc 231  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  2361316 atctccgccgcccattttccccatggtctctgcctcactcc 2361356  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 45437432 - 45437332
Alignment:
Q  116 tcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatg 215  Q
    ||||| ||||| |||||||| || || ||| | || ||||| ||||||||||| ||  |   ||| |||||||| |||||||| ||||||||||||||||    
T  45437432 tcgtaggctcttgcagcttcttcagcagtgttgaaagttccgagccaaacacgaactccttttctcgggtcacggatctcagctgcccattttccccatg 45437333  T
Q  216 g 216  Q
    |    
T  45437332 g 45437332  T

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