View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_32 (Length: 240)
Name: NF8505_low_32
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 45889909 - 45890115
Alignment:
| Q |
15 |
tggtgttaagcagatccaaaagaaatggaaacaaggccaagaaaagaaagcttactgtaaggagtgcctctctttcatgaggaatcacataagttagaaa |
114 |
Q |
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| T |
45889909 |
tggtgttaagcagatccaaaagaaatggaaacaaggccaagaaaagaaagcttactgtaaggagtgcctctctttcatgaggaatcacataagttagaaa |
45890008 |
T |
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| Q |
115 |
gtttttattctcctcttttggtactaaatctaaacgctgcaaaaatatttcagaggtcaaaaaccaatcttttatgtgtcatgaaaagattttaaaacat |
214 |
Q |
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| T |
45890009 |
gtttttattctcctcttttggtactaaatctaaacgctgcaaaaatatttcagaggtcaaaaaccaatcttttatttgtcatgaaaagattttaaaacat |
45890108 |
T |
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| Q |
215 |
cacaaat |
221 |
Q |
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||||||| |
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| T |
45890109 |
cacaaat |
45890115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 12984460 - 12984264
Alignment:
| Q |
15 |
tggtgttaagcagatccaaaagaaatggaaacaaggccaagaaaagaaagcttactgtaaggagtgcctctctttcatgaggaatcacataagttagaaa |
114 |
Q |
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||||||||||||||| || || ||||| || || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
12984460 |
tggtgttaagcagattcagaacaaatgaaatcatagccaagaaaagaaagcttaccgtaaggagtgcctctttttcatgaggaatcacataagttaggaa |
12984361 |
T |
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| Q |
115 |
gtttttattctcctcttttggtactaaatctaaacgctgc-aaaaatatttcagaggtcaaaaaccaatcttttatgtgtcatgaaaagattttaaa |
210 |
Q |
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||| || ||||||||||||||||||| ||| ||| ||||| ||||| | |||| |||||||||||||| |||| | ||||||||||| |||||||| |
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| T |
12984360 |
gttattgttctcctcttttggtactacatccaaatgctgcaaaaaacaattcatgggtcaaaaaccaattttttgtttgtcatgaaaatattttaaa |
12984264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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