View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8505_low_35 (Length: 236)

Name: NF8505_low_35
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8505_low_35
NF8505_low_35
[»] chr2 (8 HSPs)
chr2 (19-116)||(14949574-14949666)
chr2 (141-218)||(12701951-12702029)
chr2 (141-213)||(12702196-12702269)
chr2 (141-215)||(12261092-12261167)
chr2 (141-217)||(2217873-2217950)
chr2 (115-213)||(21304326-21304425)
chr2 (155-217)||(25945864-25945927)
chr2 (154-217)||(36065480-36065544)
[»] chr4 (14 HSPs)
chr4 (115-217)||(55620191-55620294)
chr4 (115-217)||(55627495-55627598)
chr4 (141-217)||(1113234-1113311)
chr4 (117-217)||(24039250-24039351)
chr4 (141-215)||(17254714-17254789)
chr4 (155-217)||(51399254-51399317)
chr4 (141-217)||(1113443-1113520)
chr4 (141-217)||(8607800-8607877)
chr4 (141-217)||(24039515-24039592)
chr4 (141-217)||(29430171-29430248)
chr4 (141-217)||(36215673-36215750)
chr4 (148-217)||(43099355-43099424)
chr4 (155-217)||(49905766-49905829)
chr4 (141-217)||(48018634-48018711)
[»] chr1 (23 HSPs)
chr1 (142-217)||(52285079-52285154)
chr1 (141-217)||(7714196-7714273)
chr1 (141-217)||(47422127-47422204)
chr1 (116-217)||(52285318-52285420)
chr1 (141-217)||(39277848-39277925)
chr1 (108-217)||(19920496-19920606)
chr1 (117-217)||(45823053-45823154)
chr1 (118-214)||(16959107-16959204)
chr1 (141-217)||(28990323-28990400)
chr1 (141-217)||(39277606-39277683)
chr1 (141-213)||(47421915-47421988)
chr1 (141-216)||(27334369-27334445)
chr1 (118-217)||(30050181-30050281)
chr1 (141-216)||(36077121-36077197)
chr1 (120-217)||(30049918-30050016)
chr1 (141-217)||(10394154-10394231)
chr1 (141-217)||(10394396-10394473)
chr1 (141-213)||(16958866-16958939)
chr1 (141-217)||(28990564-28990641)
chr1 (141-217)||(45822811-45822888)
chr1 (141-216)||(49186024-49186100)
chr1 (141-217)||(36076909-36076986)
chr1 (143-217)||(15158349-15158424)
[»] chr3 (13 HSPs)
chr3 (141-217)||(49220348-49220425)
chr3 (115-217)||(31071180-31071283)
chr3 (141-213)||(49220138-49220211)
chr3 (115-218)||(11047243-11047347)
chr3 (115-212)||(31070947-31071045)
chr3 (141-217)||(28253706-28253783)
chr3 (120-217)||(18733945-18734042)
chr3 (141-217)||(52857000-52857077)
chr3 (114-198)||(18734154-18734238)
chr3 (162-217)||(46453140-46453196)
chr3 (155-215)||(4953392-4953453)
chr3 (141-217)||(11046992-11047068)
chr3 (141-217)||(26988829-26988906)
[»] chr8 (12 HSPs)
chr8 (115-217)||(36194893-36194996)
chr8 (114-217)||(36194624-36194728)
chr8 (116-217)||(31933272-31933374)
chr8 (121-217)||(12654967-12655064)
chr8 (114-217)||(31933537-31933641)
chr8 (141-217)||(13557405-13557482)
chr8 (119-217)||(12654703-12654802)
chr8 (155-217)||(21015198-21015261)
chr8 (141-217)||(18847391-18847467)
chr8 (155-217)||(10134646-10134709)
chr8 (141-198)||(13557164-13557221)
chr8 (141-212)||(18847605-18847677)
[»] chr7 (16 HSPs)
chr7 (141-218)||(8462871-8462949)
chr7 (141-217)||(32871633-32871711)
chr7 (141-217)||(6000503-6000580)
chr7 (141-215)||(4133105-4133180)
chr7 (141-213)||(43392322-43392395)
chr7 (155-217)||(16962882-16962945)
chr7 (148-217)||(6000713-6000783)
chr7 (115-216)||(25731916-25732018)
chr7 (141-217)||(18417482-18417559)
chr7 (145-217)||(32389708-32389781)
chr7 (162-217)||(24846289-24846345)
chr7 (154-217)||(30284182-30284246)
chr7 (155-217)||(30283956-30284018)
chr7 (155-215)||(24485803-24485864)
chr7 (141-217)||(37691719-37691796)
chr7 (154-217)||(472635-472699)
[»] chr5 (7 HSPs)
chr5 (155-217)||(18508788-18508851)
chr5 (141-217)||(9989980-9990056)
chr5 (119-217)||(8417561-8417660)
chr5 (145-217)||(9990189-9990262)
chr5 (115-218)||(18968767-18968871)
chr5 (155-217)||(35463829-35463892)
chr5 (141-217)||(18968533-18968610)
[»] chr6 (1 HSPs)
chr6 (141-218)||(1211660-1211738)
[»] scaffold0220 (1 HSPs)
scaffold0220 (155-217)||(26001-26064)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 14949666 - 14949574
Alignment:
Q  19 aatttaatggggaa-gatcacatgcaaattgaagaaatcaacaaaaatgtggatagagagaggtcgtgaagagcatgccaaggactgaagaaaaagata 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    | ||||||||||||||||    
T  14949666 aatttaatggggaaagatcacatgcaaattgaagaaatcaacaaaaatgtggatag--agaggtcgtgaagagcatg----gcactgaagaaaaagata 14949574  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 12701951 - 12702029
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtatt 218  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| ||||||||| ||||||||||||    
T  12701951 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtatt 12702029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 12702269 - 12702196
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    ||||||||| | |||||||||||||||| ||||| |||||| | ||| |||||||| |||||||||||||||||    
T  12702269 taacttgatatcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaa 12702196  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 12261167 - 12261092
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 215  Q
    ||||||||||| |||||||||||||||| |||||  ||||| | ||| |||||| | |||||||||||||||||||    
T  12261167 taacttgatttcaagtatcggtttggtcacataagcaataaaaggtccgtttagctcccttaactttatttaaagt 12261092  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 2217950 - 2217873
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||  ||||||||| ||||| |||||| | ||| ||||| || |||||||||||||||||||||    
T  2217950 taacttgatttcaagtaatggtttggtcccataagtaataaaatgtccgtttatgtcccttaactttatttaaagtat 2217873  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 21304326 - 21304425
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtc-cttaactttatttaaa 213  Q
    |||||||||||| ||  |||||  | ||||||||||| || ||||||||||||| ||||| |||||| | ||  |||||| || ||||||||||||||||    
T  21304326 taggcttaaatgctcaattgatcccttaacttgatttcaaatatcggtttggtcccataagtaataaaatgttcgtttagatcgcttaactttatttaaa 21304425  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 25945864 - 25945927
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  25945864 gtatcgctttggtcccataagtaataaaagatctgtttaggtcccttaactttatttaaagtat 25945927  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 36065544 - 36065480
Alignment:
Q  154 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||| ||||||||||||| |||||| | ||| |||| ||| ||||||||||||| |||||||    
T  36065544 agtatcgttttggtctcataagtaataaaaggtccgttttggtcccttaactttattgaaagtat 36065480  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 55620191 - 55620294
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||| |||    
T  55620191 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaa 55620290  T
Q  214 gtat 217  Q
    ||||    
T  55620291 gtat 55620294  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 55627495 - 55627598
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||| |||    
T  55627495 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaa 55627594  T
Q  214 gtat 217  Q
    ||||    
T  55627595 gtat 55627598  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 1113234 - 1113311
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| ||||||||| |||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  1113234 taacttgatttcaagtatcgggttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtat 1113311  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 24039250 - 24039351
Alignment:
Q  117 ggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagt 215  Q
    |||||||||||||  |||||  | ||||||||||| |||||||||||||||| ||||| |||||| ||||  |||||||||| |||| ||||||||||||    
T  24039250 ggcttaaatgttcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagttcgtttaggtcctttaattttatttaaagt 24039349  T
Q  216 at 217  Q
    ||    
T  24039350 at 24039351  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 17254789 - 17254714
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 215  Q
    ||||||||||| |||||| |||||| |||||||| |||||| | ||| |||||||| |||||||||||||||||||    
T  17254789 taacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagt 17254714  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 51399254 - 51399317
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  51399254 gtatcgctttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtat 51399317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 1113520 - 1113443
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||| | ||||||| |||||||| ||| | |||||||||||| ||||||||| |||||||||||    
T  1113520 taacttgatttcaagtattgatttggtcccataaatattaaaaggtctgtttaggtcccttaacttcatttaaagtat 1113443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 8607800 - 8607877
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| ||||||||||||| || ||||| |||||| | ||| ||||| || |||||||||||||||||||||    
T  8607800 taacttgatttcaagtatcggtttgatcccataagtaataaaaggtccgtttaagtcccttaactttatttaaagtat 8607877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 24039592 - 24039515
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||| ||||||||||||||| |||||| | ||  |||||||| |||||||||||||| ||||||    
T  24039592 taacttgatttcaagtattggtttggtctcataagtaataaaaggttcgtttaggtcccttaactttattttaagtat 24039515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 29430248 - 29430171
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||||||||||||||| ||||||||| ||||| |||||| | || ||||||| | |||||| ||||||||||||||    
T  29430248 taacttgattttaagtattggtttggtcccataagtaataaaaggtatgtttagatcccttaattttatttaaagtat 29430171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 36215673 - 36215750
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttag-gtccttaactttatttaaagtat 217  Q
    |||||| |||| |||||||||||||||| ||||| |||||| | ||| ||||||  ||||||||||||||||||||||    
T  36215673 taacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagattccttaactttatttaaagtat 36215750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 43099355 - 43099424
Alignment:
Q  148 attttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 217  Q
    ||||||| |||||||||| |  ||||| |||||| | ||| |||||||||||||||||||||||||||||    
T  43099355 attttaaatatcggtttgattccataagtaataaaaggtccgtttaggtccttaactttatttaaagtat 43099424  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 49905766 - 49905829
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| ||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||||    
T  49905766 gtatcgctttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 49905829  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 48018634 - 48018711
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| || ||||||||||||| || || |||||| |  ||||||||| | |||||| ||||||||||||||    
T  48018634 taacttgatttaaaatatcggtttggtcccaaaagtaataaaatatctgtttagatcccttaattttatttaaagtat 48018711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 52285079 - 52285154
Alignment:
Q  142 aacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 217  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  52285079 aacttaattttaagtattggtttggtctcataagtaataaaaagtccgtttaggtccttaactttatttaaagtat 52285154  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 7714196 - 7714273
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||| |||||||||||||||||||||    
T  7714196 taacttgattttaagtatcggtttggtcccataagtaataaaaagtctgtctaggtcccttaactttatttaaagtat 7714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 47422204 - 47422127
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  47422204 taacttgatttcaagtatcggtttggtcccataagtaataagaggtctgtttaggtcccttaactttatttaaagtat 47422127  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 52285420 - 52285318
Alignment:
Q  116 aggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 214  Q
    ||||||||||||||||||| |  | |||||||||||||||||||  |||||||  |||| |||||| | |||||||||||| ||||||||||||||||||    
T  52285420 aggcttaaatgttcttttggtcccttaacttgattttaagtatcaatttggtcctataagtaataaaaggtctgtttaggtcccttaactttatttaaag 52285321  T
Q  215 tat 217  Q
    |||    
T  52285320 tat 52285318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 39277925 - 39277848
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  39277925 taacttgatttcaagtatcggtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 39277848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 19920496 - 19920606
Alignment:
Q  108 aaaaagataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaacttt 206  Q
    ||||| ||||||||||||| ||  |||||  | ||||||||||| |||||||||||||||| ||||| |||||| |  || |||||||| ||||||||||    
T  19920496 aaaaaaataggcttaaatgctcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaagatccgtttaggtcccttaacttt 19920595  T
Q  207 atttaaagtat 217  Q
    |||||||||||    
T  19920596 atttaaagtat 19920606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 45823154 - 45823053
Alignment:
Q  117 ggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 215  Q
    |||||||||||||  |||||  | ||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||    
T  45823154 ggcttaaatgttcaattgatcccttaacttgatttcaaatattggtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagt 45823055  T
Q  216 at 217  Q
    ||    
T  45823054 at 45823053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 16959204 - 16959107
Alignment:
Q  118 gcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 214  Q
    ||||||||| |||||||||    | ||||||||| |||||||||||||||| ||||| |||||| || | ||||||||| ||||||||||||||||||    
T  16959204 gcttaaatgctcttttgatcctttgacttgatttcaagtatcggtttggtcccataagtaataaaaattatgtttaggtcccttaactttatttaaag 16959107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 28990323 - 28990400
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| | |||||| |||||||||||||||||||||    
T  28990323 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgcttaggtcccttaactttatttaaagtat 28990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 39277606 - 39277683
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| |||| ||||||| |||||||| ||||| |||||| ||||| |||||||||| |||||||||||||||||||    
T  39277606 taacttaatttcaagtatcagtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 39277683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 47421915 - 47421988
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    ||||||||||| || ||||||||||||| ||||| |||||| | |||||||||||| |||||||||||||||||    
T  47421915 taacttgatttcaaatatcggtttggtcccataagtaataaaatgtctgtttaggtcccttaactttatttaaa 47421988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 27334369 - 27334445
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagta 216  Q
    ||||||||||| |||||||| ||||||||||||| |||||| |  || |||||||| ||||||||||||||||||||    
T  27334369 taacttgatttcaagtatcgatttggtctcataagtaataaaagatccgtttaggtcccttaactttatttaaagta 27334445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 30050281 - 30050181
Alignment:
Q  118 gcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtc-cttaactttatttaaagta 216  Q
    ||||||||||||||||| |    ||||||||||| |||||||||||||||| || || |||||| ||||| | ||| ||| |||||||||||||||||||    
T  30050281 gcttaaatgttcttttggtccattaacttgatttcaagtatcggtttggtcgcacaagtaataaaaagtccgattatgtctcttaactttatttaaagta 30050182  T
Q  217 t 217  Q
    |    
T  30050181 t 30050181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 36077197 - 36077121
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttagg-tccttaactttatttaaagta 216  Q
    ||||||||||| ||||||||||||| || ||||| |||||| | ||||||||||| || ||||||||||||||||||    
T  36077197 taacttgatttcaagtatcggtttgctcccataagtaataaaaggtctgtttaggttcattaactttatttaaagta 36077121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 30049918 - 30050016
Alignment:
Q  120 ttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgttt-aggtccttaactttatttaaagtat 217  Q
    ||||||| ||||||| |  | |||||| |||| |||||||||||||||||||||  |||||| ||||| |||| ||  |||||||||||||||||||||    
T  30049918 ttaaatgctcttttggtcccttaactttatttcaagtatcggtttggtctcatatgtaataaaaagtccgtttgagtcccttaactttatttaaagtat 30050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 10394154 - 10394231
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||  |||||| | |||||||||||||||||||||    
T  10394154 taacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttagatcccttaactttatttaaagtat 10394231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 10394473 - 10394396
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||| | ||||||| |||||||| ||| | ||| |||||||| |||||||||||||||||||||    
T  10394473 taacttgatttcaagtattgttttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaagtat 10394396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 16958866 - 16958939
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    ||||||||||| |||| ||||||||||| |||||||||||| | |||  ||||||| |||||||||||||||||    
T  16958866 taacttgatttcaagtgtcggtttggtcccataaataataaaaggtccatttaggtcccttaactttatttaaa 16958939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 28990641 - 28990564
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||| ||||||||| ||||| |||||| | ||| |||||||| ||||||||| |||||||||||    
T  28990641 taacttgatttcaagtattggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtat 28990564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 45822811 - 45822888
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| |||| |||||||  ||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  45822811 taacttaatttcaagtatcaatttggtcccataagtaataaaaagtccgtttaggttccttaactttatttaaagtat 45822888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 49186024 - 49186100
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagta 216  Q
    ||||||||||| ||||||| ||||||||| |||| |||||| | ||| ||||| |||| ||||||||||||||||||    
T  49186024 taacttgatttcaagtatcagtttggtcttataagtaataaaaggtccgtttacgtcctttaactttatttaaagta 49186100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 36076909 - 36076986
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| ||||||||| ||| || ||||| |||||| | ||  |||||||| |||||||||||||||||||||    
T  36076909 taacttgatttcaagtatcggcttgatcccataagtaataaaaggttcgtttaggtcccttaactttatttaaagtat 36076986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 15158349 - 15158424
Alignment:
Q  143 acttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||| |||||||||||||||| ||||| |||||| | ||  |||||||| |||||| ||||||| ||||||    
T  15158349 acttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttaggtcccttaaatttatttcaagtat 15158424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 49220425 - 49220348
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| |||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49220425 taacttaatttcaagtatcggtttggtcccataaataataaaaagtctgtttaggtcccttaactttatttaaagtat 49220348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 31071283 - 31071180
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||||||||||| ||||||  |  | ||||||||||| ||||||||||||| || |||||||||||| | |||||||||||| |||||||||||||||||    
T  31071283 taggcttaaatgctcttttcttcccttaacttgatttcaagtatcggtttgatcccataaataataaaaggtctgtttaggtcccttaactttatttaaa 31071184  T
Q  214 gtat 217  Q
    ||||    
T  31071183 gtat 31071180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 49220138 - 49220211
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaa 213  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||||||||||    
T  49220138 taacttgattttaagtatcggtttagtcccataaataataaaaagtccgtttaggtcctttaactttatttaaa 49220211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 11047347 - 11047243
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||||||||||||||  ||| |  | ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| |||||||||||||||||    
T  11047347 taggcttaaatgttcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaa 11047248  T
Q  214 gtatt 218  Q
    |||||    
T  11047247 gtatt 11047243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 31070947 - 31071045
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 212  Q
    |||||||||||||||||||| |  | ||||||||||||||||||| |||||||| ||||| |||||| |  || ||||| || ||||||||||||||||    
T  31070947 taggcttaaatgttcttttggtcccttaacttgattttaagtatcagtttggtcccataagtaataaaagatccgtttaagtcccttaactttatttaa 31071045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 28253783 - 28253706
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| ||||||||| |||||| |||||||||||| | ||||| ||| || |||||||||||||||||||||    
T  28253783 taacttgatttcaagtatcggattggtcccataaataataaaaggtctgattaagtcccttaactttatttaaagtat 28253706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 18733945 - 18734042
Alignment:
Q  120 ttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||| ||||||||| |  | ||||||||||| ||||||| |||||||| ||| |||| ||| ||||||||||| || |||||||||||||||||||||    
T  18733945 ttaaacgttcttttggtctcttaacttgatttcaagtatcagtttggtcccat-aatagtaaaaagtctgtttaagtcccttaactttatttaaagtat 18734042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 52857000 - 52857077
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| |||| |||||||||||||||| ||||| |||||| | ||| |||||| | |||||||||||||||||||||    
T  52857000 taacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagataccttaactttatttaaagtat 52857077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 18734238 - 18734154
Alignment:
Q  114 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc 198  Q
    |||| |||||||| |||||||||    |||||| |||||||||||||| |||||| | ||| |||||| ||||||||||||||||    
T  18734238 atagacttaaatgctcttttgatccattaactttattttaagtatcggcttggtcccttaagtaataaaaagtctgtttaggtcc 18734154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 46453196 - 46453140
Alignment:
Q  162 tttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  46453196 tttggtctcataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 46453140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 4953453 - 4953392
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 215  Q
    |||||| ||||||| ||||| |||||| ||||||||||| || |||||||||||||||||||    
T  4953453 gtatcgttttggtcccataagtaataaaaagtctgtttaagtcccttaactttatttaaagt 4953392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 11046992 - 11047068
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 217  Q
    ||||||||||| | |||||||||||||| |||||  ||||| | |||  |||||||| |||||||||||| ||||||    
T  11046992 taacttgatttcatgtatcggtttggtcccataagaaataaaaggtccctttaggtctttaactttatttcaagtat 11047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 26988829 - 26988906
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| |||| ||||||| |||| ||| ||||| |||||| | |||  ||||||||| |||||||||||||||||||    
T  26988829 taactttatttcaagtatcagttttgtcccataagtaataaaatgtccttttaggtcccttaactttatttaaagtat 26988906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 36194996 - 36194893
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaa 213  Q
    |||||||||||| ||||||  |  | |||||||||||||||||||||||||||| |||||||||| | || || |||||||||| |||||||||||||||    
T  36194996 taggcttaaatgctcttttagtcccttaacttgattttaagtatcggtttggtcccataaataatcaaaaatccgtttaggtcctttaactttatttaaa 36194897  T
Q  214 gtat 217  Q
    ||||    
T  36194896 gtat 36194893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 36194624 - 36194728
Alignment:
Q  114 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 212  Q
    ||||||||||||| ||||||  |  | ||||||||||| |||||||| ||||||| ||||| |||||| |||||||||||| | ||||||||||||||||    
T  36194624 ataggcttaaatgctcttttagtcccttaacttgatttcaagtatcgttttggtcccataagtaataaaaagtctgtttagatcccttaactttatttaa 36194723  T
Q  213 agtat 217  Q
    |||||    
T  36194724 agtat 36194728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 31933272 - 31933374
Alignment:
Q  116 aggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 214  Q
    ||||||||||||||||||| |  | ||| |||||||||||||| ||||||||| ||||| |||||| | |||| ||||| | ||||||||||||||||||    
T  31933272 aggcttaaatgttcttttggtcccttaatttgattttaagtattggtttggtcccataagtaataaaaggtctatttagatcccttaactttatttaaag 31933371  T
Q  215 tat 217  Q
    |||    
T  31933372 tat 31933374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 12655064 - 12654967
Alignment:
Q  121 taaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| |||||||||  | ||||||||||| |||||||||||||||| ||||| |||||| |  || |||||||| |||||||||||||||||||||    
T  12655064 taaatgctcttttgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaagttccgtttaggtcccttaactttatttaaagtat 12654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 31933641 - 31933537
Alignment:
Q  114 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaa 212  Q
    ||||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||  ||||| |||  |||||||||||||    
T  31933641 ataggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttagatccgctaactttatttaa 31933542  T
Q  213 agtat 217  Q
    |||||    
T  31933541 agtat 31933537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 13557482 - 13557405
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| ||||||||| |||||||||||    
T  13557482 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtat 13557405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 12654703 - 12654802
Alignment:
Q  119 cttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttag-gtccttaactttatttaaagtat 217  Q
    |||||||| ||||||| |  | |||||| |||| |||| ||||||||||| |||||||||||| | |||  |||||  ||||||||||||||||||||||    
T  12654703 cttaaatgctcttttggtcccttaactttatttcaagtgtcggtttggtcccataaataataaaaggtccatttagtttccttaactttatttaaagtat 12654802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 21015261 - 21015198
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  21015261 gtatcgctttggtcccataagtaataaaaagtctgtttgggtcccttaactttatttaaagtat 21015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 18847391 - 18847467
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    ||||||||||| |||||||| || |||||||||| |||||| | || |||||| |||| |||||||||||||||||||    
T  18847391 taacttgatttcaagtatcgatt-ggtctcataagtaataaaaggtttgtttatgtcccttaactttatttaaagtat 18847467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 10134646 - 10134709
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| | ||| |||||||||| |||||||||||||||||||    
T  10134646 gtatcgctttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 10134709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 13557164 - 13557221
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc 198  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||  ||||||||||    
T  13557164 taacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttaggtcc 13557221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 18847677 - 18847605
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 212  Q
    ||||||||||| ||||||| |||| ||| ||||| |||||| |||||| |||| || |||||||||| |||||    
T  18847677 taacttgatttcaagtatcagttttgtcccataagtaataaaaagtctatttaagtcccttaactttgtttaa 18847605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 8462871 - 8462949
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtatt 218  Q
    ||||||||||| || |||| |||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  8462871 taacttgatttcaaatatcagtttggtcccataaataataaaatgtctgtttaggtcctttaactttatttaaagtatt 8462949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 32871633 - 32871711
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataat-aagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||||||||||||||| ||||||||| |||||||||| || || ||||||||||| |||||||||||||||||||||    
T  32871633 taacttgattttaagtattggtttggtcccataaataataaaaaaatctgtttaggtcccttaactttatttaaagtat 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 6000503 - 6000580
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||||||||||||| ||||| |||||| |||||  ||||||| |||||||||||||||||||||    
T  6000503 taacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttaggtcccttaactttatttaaagtat 6000580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 4133180 - 4133105
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 215  Q
    ||||||||||| |||||| |||||| |||||||| |||||| | ||| |||||||| |||||||||||||||||||    
T  4133180 taacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagt 4133105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 43392322 - 43392395
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    ||||||||||| |||||| ||||||||| |||||||| ||| | ||| |||||||| |||||||||||||||||    
T  43392322 taacttgatttcaagtattggtttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaa 43392395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 16962882 - 16962945
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||||||||| |||||| | ||| |||||||||| |||||||||||||||||||    
T  16962882 gtatcgctttggtctcataagtaataaaaggtccgtttaggtccattaactttatttaaagtat 16962945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 6000783 - 6000713
Alignment:
Q  148 attttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||| ||||||| ||||||||  |||| |||||| ||||| |||||||||| |||||||||||||||||||    
T  6000783 atttcaagtatcagtttggtcctataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 6000713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 25731916 - 25732018
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||| ||| ||||| |||||| | ||||| |||| | ||||||||| |||| ||    
T  25731916 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttagtcccataagtaataaaaggtctgcttagatcccttaacttgatttcaa 25732015  T
Q  214 gta 216  Q
    |||    
T  25732016 gta 25732018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 18417559 - 18417482
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||| |||| ||||||||||||| ||  ||||||||||| | |||  ||||||| |||||||||||||||||||||    
T  18417559 taactttatttcaagtatcggtttgatcctataaataataaaaggtccatttaggtcccttaactttatttaaagtat 18417482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 32389781 - 32389708
Alignment:
Q  145 ttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    ||||||| ||||||| ||||||||  |||| |||||| | ||||||||| |||| |||||||||||||||||||    
T  32389781 ttgatttcaagtatcagtttggtccaataagtaataaaatgtctgtttaagtcccttaactttatttaaagtat 32389708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 24846289 - 24846345
Alignment:
Q  162 tttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||||    
T  24846289 tttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 24846345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 30284246 - 30284182
Alignment:
Q  154 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||| ||||||||||||| |||||| | ||| |||||||| ||||||||||||| |||||||    
T  30284246 agtatcgctttggtctcataagtaataaaatgtccgtttaggtcccttaactttattgaaagtat 30284182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 30283956 - 30284018
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 217  Q
    |||||| ||||||||||||| |||||| | ||| ||||||  ||||||||| |||||||||||    
T  30283956 gtatcgttttggtctcataagtaataaaaggtccgtttagtcccttaacttcatttaaagtat 30284018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 24485864 - 24485803
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagt 215  Q
    |||||| ||||||| ||||| |||||| ||||| ||||| |||| |||||||||||||||||    
T  24485864 gtatcgttttggtcccataagtaataaaaagtccgtttaagtcccttaactttatttaaagt 24485803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 37691719 - 37691796
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| ||||||||||||| |  ||||| |||||| ||||| | ||| || |||||| ||||||||||||||    
T  37691719 taacttgatttcaagtatcggtttgattccataagtaataaaaagtccgattaagtcccttaattttatttaaagtat 37691796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 472635 - 472699
Alignment:
Q  154 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||| ||||||||||||| |||||| | ||  |||||||| ||||||||||||| |||||||    
T  472635 agtatcgttttggtctcataagtaataaaaggtgcgtttaggtcccttaactttattgaaagtat 472699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 18508851 - 18508788
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttagg-tccttaactttatttaaagtat 217  Q
    |||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  18508851 gtatcgatttggtcccataaataataaaaagtctgtttaggttccttaactttatttaaagtat 18508788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 9989980 - 9990056
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||||||| |||||||||||| ||||| |||||| | || ||||||||| |||||||||||||||||||||    
T  9989980 taacttgattttaagaatcggtttggtc-cataattaataaaaggtatgtttaggtcccttaactttatttaaagtat 9990056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 8417561 - 8417660
Alignment:
Q  119 cttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    |||||||| ||||||| |  | ||||||||||| ||||||||||||| ||||| || |||||| |  || |||||||| |||||||||||||||||||||    
T  8417561 cttaaatgctcttttggtcccttaacttgatttcaagtatcggtttgatctcacaagtaataaaagttccgtttaggtcccttaactttatttaaagtat 8417660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 9990262 - 9990189
Alignment:
Q  145 ttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||||||| ||||| | ||||||||||| | |  ||||||||||| |||||||||||||||||||||    
T  9990262 ttgattttaagtatcagtttgatttcataaataatgaaagatctgtttaggtcccttaactttatttaaagtat 9990189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 18968871 - 18968767
Alignment:
Q  115 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 213  Q
    |||| ||||||| ||  |||||| | ||||||||||| ||||||||||||| || |||||||||||| | || ||||| | | |||||||||||| ||||    
T  18968871 taggtttaaatgctcaattgattccttaacttgatttcaagtatcggtttgatcccataaataataaaaggtatgtttggatcccttaactttatataaa 18968772  T
Q  214 gtatt 218  Q
    |||||    
T  18968771 gtatt 18968767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 35463892 - 35463829
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  35463892 gtatcgctttggtcccataagtaataaaaagtctgtttcggtcccttaactttatttaaagtat 35463829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 18968533 - 18968610
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 217  Q
    ||||||||||| |||||| |||||||| ||||||  ||||| |  || |||||||| |||||||||||||||||||||    
T  18968533 taacttgatttcaagtattggtttggtttcataatcaataaaagatccgtttaggtcccttaactttatttaaagtat 18968610  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 1211738 - 1211660
Alignment:
Q  141 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtatt 218  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |  ||||||||| | ||||||||||||||||||||||    
T  1211738 taacttgatttcaagtatctgtttggtctcataagtaataaaagatctgtttagatcccttaactttatttaaagtatt 1211660  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 26001 - 26064
Alignment:
Q  155 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 217  Q
    |||||| ||||||| ||||| |||||| |||| |||||| |||| |||||||||||||||||||    
T  26001 gtatcgctttggtcccataagtaataaaaagtttgtttaagtcccttaactttatttaaagtat 26064  T

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