View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_39 (Length: 219)
Name: NF8505_low_39
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 38975228 - 38975030
Alignment:
| Q |
4 |
aatttaaataattttgatttattaaaaatatatttgcttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtgggcattatct |
103 |
Q |
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| T |
38975228 |
aatttaaataattttgatttattaaaaatatatttgcttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtgggcattatct |
38975129 |
T |
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| Q |
104 |
tgtgtattgactcatccagaggtactagagacagcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaa |
202 |
Q |
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| T |
38975128 |
tgtgtattgactcatccagaggtactagagacggcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaa |
38975030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 38955516 - 38955560
Alignment:
| Q |
50 |
atgcttcttgctggaacagactcatcagctgtaacattagagtgg |
94 |
Q |
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| T |
38955516 |
atgctccttgctggaacggactcatctgccgtaacattagagtgg |
38955560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 14960031 - 14960085
Alignment:
| Q |
41 |
ttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtggg |
95 |
Q |
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| T |
14960031 |
ttgtagggtatgcttcttgcgggaacagacacatcagcagtgacaatagaatggg |
14960085 |
T |
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