View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8505_low_4 (Length: 580)

Name: NF8505_low_4
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8505_low_4
NF8505_low_4
[»] chr8 (8 HSPs)
chr8 (1-562)||(43479166-43479728)
chr8 (475-562)||(38799569-38799656)
chr8 (477-553)||(38807079-38807155)
chr8 (478-562)||(38821864-38821948)
chr8 (506-559)||(41944021-41944074)
chr8 (513-559)||(44344032-44344078)
chr8 (507-559)||(25865777-25865829)
chr8 (507-556)||(26592248-26592297)
[»] chr2 (3 HSPs)
chr2 (479-562)||(13576422-13576505)
chr2 (507-559)||(34562651-34562703)
chr2 (507-559)||(34571445-34571497)
[»] chr7 (3 HSPs)
chr7 (479-562)||(3929932-3930015)
chr7 (479-562)||(21317648-21317731)
chr7 (479-562)||(3928580-3928663)
[»] scaffold0197 (1 HSPs)
scaffold0197 (479-562)||(31085-31168)
[»] chr5 (8 HSPs)
chr5 (479-559)||(12546970-12547050)
chr5 (479-559)||(12531569-12531649)
chr5 (479-562)||(9866628-9866711)
chr5 (515-562)||(9870055-9870102)
chr5 (479-561)||(9894718-9894799)
chr5 (479-557)||(9903568-9903646)
chr5 (528-562)||(38735591-38735625)
chr5 (510-559)||(12538675-12538724)
[»] chr4 (1 HSPs)
chr4 (480-562)||(24860620-24860702)
[»] chr1 (1 HSPs)
chr1 (507-559)||(7594130-7594182)


Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 43479166 - 43479728
Alignment:
Q  1 atgtatgatagagtgcggtttgctgagttttagttttgaaaatgttggacttcatatttggtacagtatagctttaacgatccagttaattgatacacaa 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43479166 atgtatgatagagcgcggtttggtgagttttagttttgaaaatgttggacttcatatttggtacagtgtagctttaacgatccagttaattgatacacaa 43479265  T
Q  101 actgatatatcagtcttggtgcagaactttactagattataaaatgagcttagttcagcaacaatgaactcgtatatctttgattctttcaaatttgaga 200  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43479266 actggtatatcagtctttgtgcagaactttactagattataaaatgagcttaattcagcaacaatgaactcgtatatctttgattctttcaaatttgaga 43479365  T
Q  201 tttgcttctccacgattccttgaaatttgctcatggacagatggttttagtggcaagatctatggttggaacgtacgtcttaataagattaataatttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43479366 tttgcttctccacgattccttgaaatttgctcatggacagatggttttagtggcaagatctatggttggaacgtacgtcttaataagattaataatttca 43479465  T
Q  301 attttaagttgttagggttcactatttcaagattaataacacaaaatctaatagattgactttcttaattctgaacatgtaacaggataagattcaacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43479466 attttaagttgttagggttcactatttcaagattaataacacaaaatcaaatagattgactttcttaattctgaacacataacaggataagattcaacat 43479565  T
Q  401 agattac-aaaagataaactaaaatgaaccaaaccctaacagaaaaacacaaggaaattaaagataattagcatcagaactaagccctctcgcctctaat 499  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43479566 agattacaaaaagataaactaaaatgaaccaaaccctaacagaaaaacacaaggaaattaaagataattagcatcagaactaagccctctcgcctctaat 43479665  T
Q  500 tcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43479666 tcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaag 43479728  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 562
Target Start/End: Complemental strand, 38799656 - 38799569
Alignment:
Q  475 agaactaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||||||    
T  38799656 agaactaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaag 38799569  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 477 - 553
Target Start/End: Complemental strand, 38807155 - 38807079
Alignment:
Q  477 aactaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaat 553  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  38807155 aactaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaat 38807079  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 38821864 - 38821948
Alignment:
Q  478 actaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||||||    
T  38821864 actaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaag 38821948  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 41944074 - 41944021
Alignment:
Q  506 tgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41944074 tgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcaca 41944021  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 559
Target Start/End: Complemental strand, 44344078 - 44344032
Alignment:
Q  513 tgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcaca 44344032  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 25865829 - 25865777
Alignment:
Q  507 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    ||||| ||||||||||| |||||||| || ||||||||||||||||| |||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcaca 25865777  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 556
Target Start/End: Complemental strand, 26592297 - 26592248
Alignment:
Q  507 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagc 556  Q
    ||||| ||||||||||||||||| || ||||| | |||||||||||||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagc 26592248  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 13576505 - 13576422
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13576505 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaag 13576422  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 34562651 - 34562703
Alignment:
Q  507 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcaca 34562703  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 34571445 - 34571497
Alignment:
Q  507 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcaca 34571497  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 3929932 - 3930015
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  3929932 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaag 3930015  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 21317731 - 21317648
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||| || || | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  21317731 ctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 21317648  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 3928580 - 3928663
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    |||||| |||||||  || ||||| | |||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  3928580 ctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaag 3928663  T

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Target: scaffold0197 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 31168 - 31085
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||| || || | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  31168 ctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 31085  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 12546970 - 12547050
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    |||||| ||||||||||||||||| |  ||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  12546970 ctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcaca 12547050  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 12531649 - 12531569
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    |||||||||||||||||| ||||| |  || |||||||||||||||||||| || |||||||||||||||||||| |||||    
T  12531649 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcaca 12531569  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 9866628 - 9866711
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||||| |||||| ||||||   || ||||| || |||| ||||||||| ||||| |||||||||||||||||||||||    
T  9866628 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaag 9866711  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 9870102 - 9870055
Alignment:
Q  515 aatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaag 9870055  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 561
Target Start/End: Complemental strand, 9894799 - 9894718
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaa 561  Q
    |||||||||||||||||| ||||| |  ||||||| ||||||||| | |||||| ||||| | ||||||||||||||| ||||    
T  9894799 ctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaa 9894718  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 557
Target Start/End: Complemental strand, 9903646 - 9903568
Alignment:
Q  479 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagca 557  Q
    |||| |||||||||||   |||||| | |||||||||||||||||||| ||||| ||||| || ||||||| |||||||    
T  9903646 ctaaaccctctcgcctgcgattcttttggcaagttgaatatccttaggtataatagtaacgcttttagcataaatagca 9903568  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 562
Target Start/End: Complemental strand, 38735625 - 38735591
Alignment:
Q  528 ataattgtaaccctcttagcatgaatagcacaaag 562  Q
    |||||||||||||||||||||||||||| ||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaag 38735591  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 12538724 - 12538675
Alignment:
Q  510 agttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    ||||||||| | |||||||| || ||||| ||||||||||||||||||||    
T  12538724 agttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 24860702 - 24860620
Alignment:
Q  480 taagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcacaaag 562  Q
    ||||||||||||||||| ||||| |  || |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaag 24860620  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 7594130 - 7594182
Alignment:
Q  507 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcaca 559  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcaca 7594182  T

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