View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8505_low_5 (Length: 484)
Name: NF8505_low_5
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8505_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 12096342 - 12096803
Alignment:
| Q |
1 |
agacaccatactaaatggtctgaaggcattgcttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaaccctttgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12096342 |
agacaccatactaaatggtctgaaggcattgcttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgca |
12096441 |
T |
|
| Q |
101 |
ccaaaaaaccatcttctccaccaaaactattactacctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactctcccaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12096442 |
ccaaaaaaccatcttctccaccaaaactattactgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaact |
12096541 |
T |
|
| Q |
201 |
tttgacatcctttggctcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacac |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096542 |
tttcacatcctttggctcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacac |
12096641 |
T |
|
| Q |
301 |
ttcttattaagctcactttgtaacacattgcattctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatct |
400 |
Q |
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| T |
12096642 |
ttcttattaagctcactttgtaacacattgcattctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatct |
12096741 |
T |
|
| Q |
401 |
tatccctattttccaatgcttcatataaaaaagatatcttccggtcatatttggtacacctg |
462 |
Q |
| |
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| T |
12096742 |
tatccctattttccaatgcttcatataaaaaagatatcttcctgtcatatttggcacacctg |
12096803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 32 - 432
Target Start/End: Complemental strand, 36289244 - 36288844
Alignment:
| Q |
32 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaaccctttgcaccaaaaaaccatcttctccaccaaaactatt |
131 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| ||||||| |
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| T |
36289244 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
36289145 |
T |
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| Q |
132 |
actacctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactctcccaacttttgacatcctttggctcaaacccttttatg |
231 |
Q |
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|| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||| ||||||||||||||| |
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| T |
36289144 |
accacctctctcactcttcaatggagtcatcctcttacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
36289045 |
T |
|
| Q |
232 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaagctcactttgtaacacattgc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | |
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| T |
36289044 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattcc |
36288945 |
T |
|
| Q |
332 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaa |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| || |||||| |||||||||||||||||||||| ||| |
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| T |
36288944 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagttggaaccttaccttatcactattttccaatgcttcatatacaaa |
36288845 |
T |
|
| Q |
432 |
a |
432 |
Q |
| |
|
| |
|
|
| T |
36288844 |
a |
36288844 |
T |
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