View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8505_low_9 (Length: 387)

Name: NF8505_low_9
Description: NF8505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8505_low_9
NF8505_low_9
[»] chr1 (14 HSPs)
chr1 (20-378)||(9070033-9070391)
chr1 (32-360)||(9125513-9125841)
chr1 (32-345)||(9086344-9086657)
chr1 (23-360)||(8979326-8979663)
chr1 (22-321)||(8861925-8862224)
chr1 (32-156)||(9364246-9364370)
chr1 (32-156)||(9337387-9337511)
chr1 (42-156)||(9242684-9242798)
chr1 (252-321)||(8866030-8866099)
chr1 (38-213)||(8939169-8939344)
chr1 (38-120)||(9299979-9300061)
chr1 (35-216)||(8962093-8962274)
chr1 (35-304)||(9437906-9438175)
chr1 (35-219)||(9420823-9421007)
[»] scaffold0690 (1 HSPs)
scaffold0690 (32-156)||(1455-1579)
[»] chr6 (1 HSPs)
chr6 (32-156)||(15910527-15910651)
[»] chr3 (1 HSPs)
chr3 (35-156)||(9171346-9171467)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 9070033 - 9070391
Alignment:
Q  20 cagtgaactccttctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9070033 cagtgaactccttctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaactctttcccttctc 9070132  T
Q  120 cctgtgtattgttgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaa 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070133 cttgtgtattgttgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaa 9070232  T
Q  220 tccactcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070233 tccactcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttct 9070332  T
Q  320 ttttctctgaaatgcagataaatcttaataaatacaatggttcccattcccagtataat 378  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  9070333 ttttctctgaaatgcagataaatcttaataaatacaatggtgcccattcccaatataat 9070391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 32 - 360
Target Start/End: Original strand, 9125513 - 9125841
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    ||||||||  |||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| ||||| || ||| |||||||||||||||||||||    
T  9125513 tctgcgcagtagccaagcaagcgaaccacgttaatgtggtggattgtacccataatttccacttctgtgataaactctatcccttctccctgtgtattgt 9125612  T
Q  132 tgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatccactcgtgat 231  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||| ||||||||||||| |||||||||||| ||||| |||||    
T  9125613 tgagaatcttcacagccaccagaatctcactagagagttttcctttaaacacggttccgtgtgctccttctcctaacttttccttaaacccactagtgat 9125712  T
Q  232 cctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttctttttctctgaaa 331  Q
     |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  9125713 tctttttatatcagaatatgaaaatctggcaggcttttgtgctctataatcctctaaaaacctatcaactctaacttgatcttcttctttttctctgaaa 9125812  T
Q  332 tgcagataaatcttaataaatacaatggt 360  Q
    || ||||||||||| |||||| |||||||    
T  9125813 tgtagataaatctttataaatgcaatggt 9125841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 32 - 345
Target Start/End: Original strand, 9086344 - 9086657
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  9086344 tctgcgcaaaatccaagcaaccgaaccacgttgatatggtgtatttttcccataatttctacttcagtgatgaactctttaccttctccctgtgtattgt 9086443  T
Q  132 tgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatccactcgtgat 231  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||| ||||| || | |||||||||||||||||| || || |||||||| ||||  |||||    
T  9086444 tgagaattttcacagccaccagaatatcactagagagttttcccttaaacactgttccgtgagctccttctccaagtttctccttaaacccacctgtgat 9086543  T
Q  232 cctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttctttttctctgaaa 331  Q
      ||||||||||||  || |||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||| | || |||    
T  9086544 tgtttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgatcttctttttttcccctaaaa 9086643  T
Q  332 tgcagataaatctt 345  Q
    || |||||||||||    
T  9086644 tgtagataaatctt 9086657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 23 - 360
Target Start/End: Original strand, 8979326 - 8979663
Alignment:
Q  23 tgaactccttctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccct 122  Q
    |||| ||| ||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||||||| |||||||  | ||||| |||||||| ||||| |    
T  8979326 tgaattccctctgcacagaagccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttcgctaatgaactctttcccgtctcctt 8979425  T
Q  123 gtgtattgttgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatcc 222  Q
     |||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||    
T  8979426 ctgtattgttgagaatcttcacagcaaccagaatctcatttgagagttttcctttaaatacttttccgtgagctccttctcctagtttttccttaaaccc 8979525  T
Q  223 actcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttctttt 322  Q
    | | ||||| |||||||||||||   | |||||||| | ||| | ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  8979526 atttgtgattctttttatatcagcaaaagaaaatctagtaggttgttgtgctctataatcctctaaaaacttgtcaactctaacttgatcttcttctttt 8979625  T
Q  323 tctctgaaatgcagataaatcttaataaatacaatggt 360  Q
    | ||| ||||  | ||| ||||||||||||| ||||||    
T  8979626 tttctaaaatataaatagatcttaataaatataatggt 8979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 8861925 - 8862224
Alignment:
Q  22 gtgaactccttctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccc 121  Q
    ||||| ||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  8861925 gtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccataattcccacttcattgatgaactctttcccttctccc 8862024  T
Q  122 tgtgtattgttgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatc 221  Q
    | ||||   ||||| || ||||| |||||  |||||||||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||| || |    
T  8862025 tctgtaccattgaggattttcaccgccacatgaatctcactcgagagctttcctttaaacacagttccgtgagctccttctcctagcttttccttgaacc 8862124  T
Q  222 cactcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttcttt 321  Q
    |  | || || ||||||||||| |  || |||||||| | ||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  8862125 cgtttgtaattctttttatatcggcataagaaaatctagtaggtttttgtgctcgataatcctctaaaaacttatcaactctaatttgatcctcttcttt 8862224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 9364370 - 9364246
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||  || |||||||| | |||||||| ||||| ||| ||| |||||| |    
T  9364370 tctgcgcagaagccaagcaaacgaacgacattgagatggtgaattttgcccatggttcccacttcatttatgaattccttcccatcttcctttgtattat 9364271  T
Q  132 tgagaatcttcacagccactagaat 156  Q
    | ||||||||||| || ||||||||    
T  9364270 taagaatcttcacggctactagaat 9364246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 9337511 - 9337387
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||  || |||||||| | |||||||| ||||| ||| ||| |||||| |    
T  9337511 tctgcgcagaagccgagcaaacgaacgacattgagatggtgaattttgcccatggttcccacttcatttatgaattccttcccatcttcctatgtattat 9337412  T
Q  132 tgagaatcttcacagccactagaat 156  Q
    | ||||||||||| || ||||||||    
T  9337411 taagaatcttcacggctactagaat 9337387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 9242684 - 9242798
Alignment:
Q  42 agccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttgagaatctt 141  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||  || |||||||| | |||||||| ||||| ||| ||| || ||| || ||||||||    
T  9242684 agccaagcaaacgaacgacatttagatgatgaatcttgcccatggttcccacttcatttatgaattccttcccatcttcctctgcattattaagaatctt 9242783  T
Q  142 cacagccactagaat 156  Q
    ||| || ||||||||    
T  9242784 cacggctactagaat 9242798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 8866030 - 8866099
Alignment:
Q  252 aaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattctaacttgatcttcttcttt 321  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  8866030 aaaatctagtaggtttttgagctcgataatcctctaaaaacttatcaactctaatttgatcctcttcttt 8866099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 8939344 - 8939169
Alignment:
Q  38 caaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttgagaa 137  Q
    |||||||||||||| || || ||||| | ||| |||||||| |||||| || |||||||| | ||||| ||| |||| |||||||  |||||  | || |    
T  8939344 caaaagccaagcaaccggacaacattaacatgatgaatttttcccatagttcccacttcatttatgaactctctcccatctccctcggtattactaagca 8939245  T
Q  138 tcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttc 213  Q
    ||||||| || || ||||| | ||| || | ||| |||||| | || | ||| ||||||||||| |||||||||||    
T  8939244 tcttcacggcaacaagaatttgactcgataatttacctttatagacagctccatgagctccttcccctagcttttc 8939169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 9300061 - 9299979
Alignment:
Q  38 caaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctcc 120  Q
    ||||||||||||||||| || ||||||| |||||| |||||||||||  || |||||||| | ||||| || ||||| |||||    
T  9300061 caaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctcc 9299979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 8962274 - 8962093
Alignment:
Q  35 gcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttga 134  Q
    |||||||||||||| || || || ||||| | ||| || ||||| |||||| || | |||||| | ||||| ||| |||| ||||| | |||||| || |    
T  8962274 gcgcaaaagccaagtaaccggacaacattaacatgatggatttttcccatagttcctacttcatttatgaactctctcccatctccttctgtattattaa 8962175  T
Q  135 gaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttcctt 216  Q
    | ||||||||||| || ||||| | ||| || | ||| |||||  | || | ||| ||||||||||| || |||||||||||    
T  8962174 gcatcttcacagcaacaagaatttgactcgataatttacctttgtagacagctccatgagctccttcgcccagcttttcctt 8962093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 9437906 - 9438175
Alignment:
Q  35 gcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttga 134  Q
    |||||||| |||| ||| ||||| |||||||| || |||||||| ||||||  || ||||||  | ||||| ||||| || || ||||  || || || |    
T  9437906 gcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaa 9438005  T
Q  135 gaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaatccactcgtgatcct 234  Q
    | |||||||||||||| ||||| ||| |||| | ||| ||||| || || |  || ||||||||||| |||| || |||| ||||   | | || |||||    
T  9438006 gcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcct 9438105  T
Q  235 ttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaacttatcaattcta 304  Q
     ||||||||||  || || ||||| ||||| ||  | || || ||||||||||| ||||| || ||||||    
T  9438106 ctttatatcagcataagagaatcttgcagggttgagtgccctgtaatcctctaagaacttttcgattcta 9438175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 9420823 - 9421007
Alignment:
Q  35 gcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttga 134  Q
    |||||||| |||| ||| ||||| |||||||| || |||||||| ||||||  || ||||||  | ||||| ||||| || || ||||  || || || |    
T  9420823 gcgcaaaatccaaccaagcgaacaacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaa 9420922  T
Q  135 gaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgtgagctccttctcctagcttttccttaaa 219  Q
    | |||||||||||||| ||||| ||| |||| | ||| ||||| || || |  || ||||||||||| |||| || |||| ||||    
T  9420923 gcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaa 9421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 1579 - 1455
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||||||||  || |||||||| | |||||||| ||||| ||||||| || ||| |    
T  1579 tctgcgcaaaagccaagcaaacgaacgacattgagatggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattat 1480  T
Q  132 tgagaatcttcacagccactagaat 156  Q
    | ||||||||||| || ||||||||    
T  1479 taagaatcttcacggctactagaat 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 15910527 - 15910651
Alignment:
Q  32 tctgcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgt 131  Q
    |||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||  || |||||||| | |||||||| ||||| ||||||| || ||| |    
T  15910527 tctgagcaaaagccgagcaaacgaacgacattgagatggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattat 15910626  T
Q  132 tgagaatcttcacagccactagaat 156  Q
    | ||||||||||| || ||||||||    
T  15910627 taagaatcttcacggctactagaat 15910651  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 9171467 - 9171346
Alignment:
Q  35 gcgcaaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaattctttcccttctccctgtgtattgttga 134  Q
    |||||||||||||||||||| || ||||| | |||||| |||||||||||| || |||||||| | ||||| || ||||| ||||||| ||| || || |    
T  9171467 gcgcaaaagccaagcaaacggacaacatttagatggtggattttgcccatagttcccacttcatttatgaactccttcccatctccctctgtgttattta 9171368  T
Q  135 gaatcttcacagccactagaat 156  Q
    | ||||| ||| | ||||||||    
T  9171367 gcatcttaacaccaactagaat 9171346  T

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