View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8506_high_10 (Length: 315)

Name: NF8506_high_10
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8506_high_10
NF8506_high_10
[»] chr4 (1 HSPs)
chr4 (1-315)||(55690020-55690330)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 55690020 - 55690330
Alignment:
Q  1 catggataagggaatgtatcttgcctccacttaggccaaactttctgagtatatgtctattttagatagttctactcctttctagttttcatcactgagg 100  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  55690020 catggataagtgaatgtatcttgcttccacttaggctaaactttctgagtatatgtctattttagatagttctgctcctttctagttttcatcac-gagg 55690118  T
Q  101 ttatctttggtgtactacgatgaaccagtgttaactttggaaataataaagaagctataagaaataaatctcttccatgatagcttcatgggaagactgt 200  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55690119 ttatctttggtgtactacga---accagtgttaactttggaaataataaagaagctataagaaataaatctcttccatgatagcttcatgggaagactgt 55690215  T
Q  201 gtctctgtgcatttataactgcaggtacctaaacattgtctggtgatatctatgttgctcaaaagtcagttttccctatatcgagtgaatttcaagttaa 300  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55690216 gtctttgtgcatttataactgcaggtaccaaaacattgtctggtgatatctatgttgctcaaaagtcagttttccctatatcgagtgaatttcaagttta 55690315  T
Q  301 aagatatggaatgtc 315  Q
    || ||||||||||||    
T  55690316 aatatatggaatgtc 55690330  T

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