View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_14 (Length: 250)
Name: NF8506_high_14
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 45706769 - 45706883
Alignment:
| Q |
119 |
gagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacgtttggattgctgtacc |
218 |
Q |
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| T |
45706769 |
gagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacgtttggattgctgtacc |
45706868 |
T |
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| Q |
219 |
accaaatatcattcc |
233 |
Q |
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| T |
45706869 |
accaaatatcattcc |
45706883 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45706651 - 45706704
Alignment:
| Q |
1 |
tttgtgacagaccacttgcttacacgtgacctagccttctttgcctgcacgtac |
54 |
Q |
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| T |
45706651 |
tttgtgacagaccacttgcttacacttgacctagccttctttgcctgcacgtac |
45706704 |
T |
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