View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_15 (Length: 247)
Name: NF8506_high_15
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_15 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 3458 - 3685
Alignment:
| Q |
8 |
gaaactcaaacttgagccaggcttttcaaattattttatgagtaagt----gaataacataactttttaaaccattcctttttgcctacttgattatttt |
103 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||| |||||||| ||||||||| |||||||| |||||||| |
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| T |
3458 |
gaaactcaaacttgagccaagcttttcaaattattttatgattaattaactgaataacataaccttttaaacaattccttttagcctactttattatttt |
3557 |
T |
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| Q |
104 |
aagccatgcttttctgttcccaaatgaaaagaaattggaaacactgcatgcatgttacaaacttggaaaatccagcacatagtattgtttacatgtgaat |
203 |
Q |
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||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3558 |
aagccatgcttttctgttcccaagtgaaaaagaaaaaaaaaccctgcatgcatgttacaaacttggaaaatccagcacatagtattgtttacatgtgaat |
3657 |
T |
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| Q |
204 |
ttttccgcataagacacacaatatgatg |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3658 |
ttttccgcataagacacacaatatgatg |
3685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 6365727 - 6365954
Alignment:
| Q |
8 |
gaaactcaaacttgagccaggcttttcaaattattttatgagtaagt----gaataacataactttttaaaccattcctttttgcctacttgattatttt |
103 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||| |||||||| ||||||||| |||||||| |||||||| |
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| T |
6365727 |
gaaactcaaacttgagccaagcttttcaaattattttatgattaattaactgaataacataaccttttaaacaattccttttagcctactttattatttt |
6365826 |
T |
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| Q |
104 |
aagccatgcttttctgttcccaaatgaaaagaaattggaaacactgcatgcatgttacaaacttggaaaatccagcacatagtattgtttacatgtgaat |
203 |
Q |
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||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365827 |
aagccatgcttttctgttcccaagtgaaaaagaaaaaaaaaccctgcatgcatgttacaaacttggaaaatccagcacatagtattgtttacatgtgaat |
6365926 |
T |
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| Q |
204 |
ttttccgcataagacacacaatatgatg |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6365927 |
ttttccgcataagacacacaatatgatg |
6365954 |
T |
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