View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_17 (Length: 238)
Name: NF8506_high_17
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40226410 - 40226634
Alignment:
| Q |
1 |
aaatttttacaattaaagaaaacaacattgatgtgctaacatttcataaagaaaacaacaataatctctagacatgagacattaaattgaacctctttaa |
100 |
Q |
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| T |
40226410 |
aaatttttacaattaaagaaaacaacattgatgtgctaacatttcataaagaaaacaacaataatatctagacatgagacattaaattgaacctctttaa |
40226509 |
T |
|
| Q |
101 |
catgaaaatcaataccctttgcnnnnnnnnnt--gaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaatta |
198 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226510 |
catgaaaatcaataccctttgcaaaaaaaaataaaaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaatta |
40226609 |
T |
|
| Q |
199 |
aataattgggacaatgtggaagatt |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40226610 |
aataattgggacaatgtggaagatt |
40226634 |
T |
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