View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8506_high_2 (Length: 466)

Name: NF8506_high_2
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8506_high_2
NF8506_high_2
[»] chr1 (2 HSPs)
chr1 (7-215)||(36202208-36202416)
chr1 (257-385)||(36202458-36202585)
[»] chr7 (1 HSPs)
chr7 (392-435)||(30177037-30177080)
[»] chr6 (3 HSPs)
chr6 (392-449)||(19602214-19602271)
chr6 (394-427)||(3846249-3846282)
chr6 (397-434)||(10341404-10341441)
[»] chr4 (1 HSPs)
chr4 (391-448)||(8457896-8457952)
[»] chr8 (1 HSPs)
chr8 (391-431)||(27587901-27587941)
[»] scaffold0014 (1 HSPs)
scaffold0014 (393-439)||(139553-139599)
[»] chr5 (3 HSPs)
chr5 (391-425)||(31264431-31264465)
chr5 (392-440)||(37854708-37854756)
chr5 (391-431)||(41558715-41558755)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 36202208 - 36202416
Alignment:
Q  7 gcaaagagtttttacagtggctcgttgtttccgcactctctgcacaggacagtttcactccctgttgatgctgttgatatataaattttatgaagctctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202208 gcaaagagtttttacagtggctcgttgtttccgcactctctgcacaggacagtttcactccctgttgatgctgttgatatataaattttatgaagctctt 36202307  T
Q  107 attgaattcttttgtagattatacatatatgagttttcacatggaggctatcttgatttttatatcacccccaccctgggtaccattgaattaagattgg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202308 attgaattcttttgtagattatacatatatgagttttcacatggaggctatcttgatttttatatcacccccaccctgggtaccattgaattaagattgg 36202407  T
Q  207 atgaccaac 215  Q
    |||||||||    
T  36202408 atgaccaac 36202416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 257 - 385
Target Start/End: Original strand, 36202458 - 36202585
Alignment:
Q  257 cgctaaagttgaaatgcgagtacttcaatctttattttgatcatatgatgatgttttctgtagcaccgacactcctgagtttttgatcgagggcgtgtct 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36202458 cgctaaagttgaaatgcgagtacttcaatctttattttgatcatatgatgatgttttctgtagcaccgacactcctgag-ttttgatcgagggcgtgtct 36202556  T
Q  357 gtatcccacaccaacacgacactgacata 385  Q
    ||||||||||||||||| |||||||||||    
T  36202557 gtatcccacaccaacacaacactgacata 36202585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 30177037 - 30177080
Alignment:
Q  392 tcattttctcaaattattacttgtgttgatgtgtcagtgttgtg 435  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  30177037 tcattttctcaaattattactggtgttgacgtgtcagtgttgtg 30177080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 19602214 - 19602271
Alignment:
Q  392 tcattttctcaaattattacttgtgttgatgtgtcagtgttgtgtccggtatccatgt 449  Q
    |||||||||||||||||||   |||||| |||||| |||||||||||||| |||||||    
T  19602214 tcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtccggtgtccatgt 19602271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 3846282 - 3846249
Alignment:
Q  394 attttctcaaattattacttgtgttgatgtgtca 427  Q
    ||||||||||||||||||||||||| ||||||||    
T  3846282 attttctcaaattattacttgtgtttatgtgtca 3846249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 10341441 - 10341404
Alignment:
Q  397 ttctcaaattattacttgtgttgatgtgtcagtgttgt 434  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  10341441 ttctcagattattactggtgttgatgtgtcagtgttgt 10341404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 8457952 - 8457896
Alignment:
Q  391 gtcattttctcaaattattacttgtgttgatgtgtcagtgttgtgtccggtatccatg 448  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||||||| ||||||    
T  8457952 gtcattttctcaaattattaccagtga-gatgtgtcagtgttgtgtccggtgtccatg 8457896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 27587941 - 27587901
Alignment:
Q  391 gtcattttctcaaattattacttgtgttgatgtgtcagtgt 431  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  27587941 gtcattttttcaaattattactggtgttgatgtgtcagtgt 27587901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 139553 - 139599
Alignment:
Q  393 cattttctcaaattattacttgtgttgatgtgtcagtgttgtgtccg 439  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||||||    
T  139553 cattttctcaaatcattaccagtgttgacgtgtcagtgttgtgtccg 139599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 31264465 - 31264431
Alignment:
Q  391 gtcattttctcaaattattacttgtgttgatgtgt 425  Q
    ||||||||||||||||||||||||||| |||||||    
T  31264465 gtcattttctcaaattattacttgtgtcgatgtgt 31264431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 37854756 - 37854708
Alignment:
Q  392 tcattttctcaaattattacttgtgttgatgtgtcagtgttgtgtccgg 440  Q
    ||||||||||||| ||||||  |||| ||||||||||||| ||||||||    
T  37854756 tcattttctcaaactattacaggtgtcgatgtgtcagtgtcgtgtccgg 37854708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 41558715 - 41558755
Alignment:
Q  391 gtcattttctcaaattattacttgtgttgatgtgtcagtgt 431  Q
    |||||||||||||||||||| ||||||  ||||||||||||    
T  41558715 gtcattttctcaaattattatttgtgtcaatgtgtcagtgt 41558755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University